Directions for research and training in plant omics: Big Questions and Big Data
Abstract A key remit of the NSF‐funded “Arabidopsis Research and Training for the 21st Century” (ART‐21) Research Coordination Network has been to convene a series of workshops with community members to explore issues concerning research and training in plant biology, including the role that researc...
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doaj-037f1a2cc38d497d91c1c89013e2e0a92021-05-02T12:37:33ZengWileyPlant Direct2475-44552019-04-0134n/an/a10.1002/pld3.133Directions for research and training in plant omics: Big Questions and Big DataCristiana T. Argueso0Sarah M. Assmann1Kenneth D. Birnbaum2Sixue Chen3José R. Dinneny4Colleen J. Doherty5Andrea L. Eveland6Joanna Friesner7Vanessa R. Greenlee8Julie A. Law9Amy Marshall‐Colón10Grace Alex Mason11Ruby O'Lexy12Scott C. Peck13Robert J. Schmitz14Liang Song15David Stern16Marguerite J. Varagona17Justin W. Walley18Cranos M. Williams19Department of Bioagricultural Sciences and Pest Management Colorado State University Fort Collins ColoradoBiology Department Penn State University University Park PennsylvaniaDepartment of Biology Center for Genomics and Systems Biology New York University New York New YorkDepartment of Biology Genetics Institute Plant Molecular and Cellular Biology Program University of Florida Gainesville FloridaDepartment of Biology Stanford University Stanford CaliforniaDepartment of Molecular and Structural Biochemistry North Carolina State University Raleigh North CarolinaDonald Danforth Plant Science Center St. Louis MissouriUC Davis Davis CaliforniaInternational Programs College of Agriculture and Life Sciences Cornell University Ithaca New YorkPlant Molecular and Cellular Biology Laboratory Salk Institute for Biological Studies La Jolla CaliforniaDepartment of Plant Biology University of Illinois Urbana‐Champaign Urbana IllinoisDepartment of Plant Biology and Genome Center UC Davis Davis CaliforniaCoriell Institute for Medical Research Camden New JerseyDivision of Biochemistry Christopher S. Bond Life Sciences Center Interdisciplinary Plant Group University of Missouri Columbia MissouriDepartment of Genetics University of Georgia Athens GeorgiaDepartment of Botany The University of British Columbia Vancouver British Columbia CanadaBoyce Thompson Institute Ithaca New YorkBayer US – Crop Science Division, Plant Biotechnology Chesterfield MissouriDepartment of Plant Pathology and Microbiology Iowa State University Ames IowaDepartment of Electrical and Computer Engineering North Carolina State University Raleigh North CarolinaAbstract A key remit of the NSF‐funded “Arabidopsis Research and Training for the 21st Century” (ART‐21) Research Coordination Network has been to convene a series of workshops with community members to explore issues concerning research and training in plant biology, including the role that research using Arabidopsis thaliana can play in addressing those issues. A first workshop focused on training needs for bioinformatic and computational approaches in plant biology was held in 2016, and recommendations from that workshop have been published (Friesner et al., Plant Physiology, 175, 2017, 1499). In this white paper, we provide a summary of the discussions and insights arising from the second ART‐21 workshop. The second workshop focused on experimental aspects of omics data acquisition and analysis and involved a broad spectrum of participants from academics and industry, ranging from graduate students through post‐doctorates, early career and established investigators. Our hope is that this article will inspire beginning and established scientists, corporations, and funding agencies to pursue directions in research and training identified by this workshop, capitalizing on the reference species Arabidopsis thaliana and other valuable plant systems.https://doi.org/10.1002/pld3.133genomicsmetabolomicsproteomicstrainingtranscriptomics |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Cristiana T. Argueso Sarah M. Assmann Kenneth D. Birnbaum Sixue Chen José R. Dinneny Colleen J. Doherty Andrea L. Eveland Joanna Friesner Vanessa R. Greenlee Julie A. Law Amy Marshall‐Colón Grace Alex Mason Ruby O'Lexy Scott C. Peck Robert J. Schmitz Liang Song David Stern Marguerite J. Varagona Justin W. Walley Cranos M. Williams |
spellingShingle |
Cristiana T. Argueso Sarah M. Assmann Kenneth D. Birnbaum Sixue Chen José R. Dinneny Colleen J. Doherty Andrea L. Eveland Joanna Friesner Vanessa R. Greenlee Julie A. Law Amy Marshall‐Colón Grace Alex Mason Ruby O'Lexy Scott C. Peck Robert J. Schmitz Liang Song David Stern Marguerite J. Varagona Justin W. Walley Cranos M. Williams Directions for research and training in plant omics: Big Questions and Big Data Plant Direct genomics metabolomics proteomics training transcriptomics |
author_facet |
Cristiana T. Argueso Sarah M. Assmann Kenneth D. Birnbaum Sixue Chen José R. Dinneny Colleen J. Doherty Andrea L. Eveland Joanna Friesner Vanessa R. Greenlee Julie A. Law Amy Marshall‐Colón Grace Alex Mason Ruby O'Lexy Scott C. Peck Robert J. Schmitz Liang Song David Stern Marguerite J. Varagona Justin W. Walley Cranos M. Williams |
author_sort |
Cristiana T. Argueso |
title |
Directions for research and training in plant omics: Big Questions and Big Data |
title_short |
Directions for research and training in plant omics: Big Questions and Big Data |
title_full |
Directions for research and training in plant omics: Big Questions and Big Data |
title_fullStr |
Directions for research and training in plant omics: Big Questions and Big Data |
title_full_unstemmed |
Directions for research and training in plant omics: Big Questions and Big Data |
title_sort |
directions for research and training in plant omics: big questions and big data |
publisher |
Wiley |
series |
Plant Direct |
issn |
2475-4455 |
publishDate |
2019-04-01 |
description |
Abstract A key remit of the NSF‐funded “Arabidopsis Research and Training for the 21st Century” (ART‐21) Research Coordination Network has been to convene a series of workshops with community members to explore issues concerning research and training in plant biology, including the role that research using Arabidopsis thaliana can play in addressing those issues. A first workshop focused on training needs for bioinformatic and computational approaches in plant biology was held in 2016, and recommendations from that workshop have been published (Friesner et al., Plant Physiology, 175, 2017, 1499). In this white paper, we provide a summary of the discussions and insights arising from the second ART‐21 workshop. The second workshop focused on experimental aspects of omics data acquisition and analysis and involved a broad spectrum of participants from academics and industry, ranging from graduate students through post‐doctorates, early career and established investigators. Our hope is that this article will inspire beginning and established scientists, corporations, and funding agencies to pursue directions in research and training identified by this workshop, capitalizing on the reference species Arabidopsis thaliana and other valuable plant systems. |
topic |
genomics metabolomics proteomics training transcriptomics |
url |
https://doi.org/10.1002/pld3.133 |
work_keys_str_mv |
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