Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic

The blue land crab Cardisoma guanhumi is widely distributed throughout tropical and subtropical estuarine regions in the Western Central Atlantic (WCA). Patterns of population genetic structure and historical demographics of the species were assessed by mtDNA control region sequence analysis to exam...

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Main Authors: Maria Rosimere Xavier Amaral, Marc Albrecht, Alan Shane McKinley, Adriana Márcia Ferreira de Carvalho, Severino Cavalcante de Sousa, Fabio Mendonça Diniz
Format: Article
Language:English
Published: MDPI AG 2015-08-01
Series:Molecules
Subjects:
Online Access:http://www.mdpi.com/1420-3049/20/8/15158
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spelling doaj-0ac03909e463421c9274cb9829913a7b2020-11-24T22:01:19ZengMDPI AGMolecules1420-30492015-08-01208151581517410.3390/molecules200815158molecules200815158Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central AtlanticMaria Rosimere Xavier Amaral0Marc Albrecht1Alan Shane McKinley2Adriana Márcia Ferreira de Carvalho3Severino Cavalcante de Sousa4Fabio Mendonça Diniz5Molecular Biology & Biotechnology Laboratory, EMBRAPA Meio-Norte, CP 01, Teresina, PI 64049-550, BrazilDepartment of Biology, University of Nebraska at Kearney, Kearney, NE 68849, USANational Park Service, 18001 Old Cutler Bay Rd Suite 419, Palmetto Bay, FL 33190, USAMolecular Biology & Biotechnology Laboratory, EMBRAPA Meio-Norte, CP 01, Teresina, PI 64049-550, BrazilDepartment of Zootechny, Universidade Federal do Piauí, Bom Jesus, PI 64900-000, BrazilMolecular Biology & Biotechnology Laboratory, EMBRAPA Meio-Norte, CP 01, Teresina, PI 64049-550, BrazilThe blue land crab Cardisoma guanhumi is widely distributed throughout tropical and subtropical estuarine regions in the Western Central Atlantic (WCA). Patterns of population genetic structure and historical demographics of the species were assessed by mtDNA control region sequence analysis to examine the connectivity among five populations (n = 97) within the region for future conservation strategies and decision-making of fishery management. A total of 234 polymorphic nucleotides were revealed within the sequence region, which have defined 93 distinct haplotypes. No dominant mtDNA haplotypes were found but instead a distribution of a few low-frequency recurrent haplotypes with a large number of singletons. A NJ-tree and a median-joining haplotype network revealed two distinct clusters, corresponding to individuals from estuaries located along the Caribbean Sea and Brazilian waters, respectively. AMOVA and FST statistics supported the hypothesis that two main geographic regions exists. Phylogeographical discontinuity was further demonstrated by the Bayesian assignment analysis and a significant pattern of isolation-by-distance. Additionally, tests of neutral evolution and analysis of mismatch distribution indicate a complex demographic history in the WCA, which corresponds to bottleneck and subsequent population growth. Overall, a sharp genetic break between Caribbean and Brazilian populations raised concerns over the conservation status of the blue land crab.http://www.mdpi.com/1420-3049/20/8/15158population structurephylogeographybrachyuran crabssequencinggenetic diversitycontrol regionmtDNA
collection DOAJ
language English
format Article
sources DOAJ
author Maria Rosimere Xavier Amaral
Marc Albrecht
Alan Shane McKinley
Adriana Márcia Ferreira de Carvalho
Severino Cavalcante de Sousa
Fabio Mendonça Diniz
spellingShingle Maria Rosimere Xavier Amaral
Marc Albrecht
Alan Shane McKinley
Adriana Márcia Ferreira de Carvalho
Severino Cavalcante de Sousa
Fabio Mendonça Diniz
Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
Molecules
population structure
phylogeography
brachyuran crabs
sequencing
genetic diversity
control region
mtDNA
author_facet Maria Rosimere Xavier Amaral
Marc Albrecht
Alan Shane McKinley
Adriana Márcia Ferreira de Carvalho
Severino Cavalcante de Sousa
Fabio Mendonça Diniz
author_sort Maria Rosimere Xavier Amaral
title Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
title_short Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
title_full Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
title_fullStr Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
title_full_unstemmed Mitochondrial DNA Variation Reveals a Sharp Genetic Break within the Distribution of the Blue Land Crab Cardisoma guanhumi in the Western Central Atlantic
title_sort mitochondrial dna variation reveals a sharp genetic break within the distribution of the blue land crab cardisoma guanhumi in the western central atlantic
publisher MDPI AG
series Molecules
issn 1420-3049
publishDate 2015-08-01
description The blue land crab Cardisoma guanhumi is widely distributed throughout tropical and subtropical estuarine regions in the Western Central Atlantic (WCA). Patterns of population genetic structure and historical demographics of the species were assessed by mtDNA control region sequence analysis to examine the connectivity among five populations (n = 97) within the region for future conservation strategies and decision-making of fishery management. A total of 234 polymorphic nucleotides were revealed within the sequence region, which have defined 93 distinct haplotypes. No dominant mtDNA haplotypes were found but instead a distribution of a few low-frequency recurrent haplotypes with a large number of singletons. A NJ-tree and a median-joining haplotype network revealed two distinct clusters, corresponding to individuals from estuaries located along the Caribbean Sea and Brazilian waters, respectively. AMOVA and FST statistics supported the hypothesis that two main geographic regions exists. Phylogeographical discontinuity was further demonstrated by the Bayesian assignment analysis and a significant pattern of isolation-by-distance. Additionally, tests of neutral evolution and analysis of mismatch distribution indicate a complex demographic history in the WCA, which corresponds to bottleneck and subsequent population growth. Overall, a sharp genetic break between Caribbean and Brazilian populations raised concerns over the conservation status of the blue land crab.
topic population structure
phylogeography
brachyuran crabs
sequencing
genetic diversity
control region
mtDNA
url http://www.mdpi.com/1420-3049/20/8/15158
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