Identification of four differentially methylated genes as prognostic signatures for stage I lung adenocarcinoma

• Main Authors: Wei-Ming Luo, Zheng-Yu Wang, Xin Zhang
• Format: Article
• Language: English
• Published: BMC 2018-04-01
• Series: Cancer Cell International
• Subjects: Lung adenocarcinoma; Prognostic signature; DNA methylation; Survival analysis
• Online Access: http://link.springer.com/article/10.1186/s12935-018-0547-6

Abstract Background Lung adenocarcinoma (LUAD) is the main subtype of non-small cell lung cancer with a low survival prognosis. We aimed to generate a prognostic model for the postoperative recurrence of LUAD. Methods The methylated DNA data of LUAD patients were downloaded from the Cancer Genome Atlas (TCGA). The differentially methylated genes were identified and protein–protein interacting network was constructed, with which prognostic signature of this cancer was generated. Survival and functional pathways analysis w used to evaluate the clustering ability of the prognostic signature. Results We identified 151 differentially methylated genes related to relapse-free survival of patients with LUAD. Nine hub genes were identified in PPI network, with which 4 gene pair signature was selected as prognostic signature. The potential functions of 6 genes (JDP2, SERPINA5, PLG, SEMG2, RFX5, and POLR3B) in the 4-gene pair signature were enriched in intracellular protein synthesis and transportation. Conclusion The four gene pair signature can predict the prognosis of patients with stage I LUAD. Our study provides a reference for patients with postoperative adjuvant therapy.