ECNet is an evolutionary context-integrated deep learning framework for protein engineering

Protein engineering is an active area of research in which machine learning has proven quite powerful. Here, the authors present a deep learning method that integrates both general and protein-specific sequence representations to improve the engineering of one’s protein of interest.

Bibliographic Details
Main Authors: Yunan Luo, Guangde Jiang, Tianhao Yu, Yang Liu, Lam Vo, Hantian Ding, Yufeng Su, Wesley Wei Qian, Huimin Zhao, Jian Peng
Format: Article
Language:English
Published: Nature Publishing Group 2021-09-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-021-25976-8
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spelling doaj-0bb0a79962b04f8bba4f09b68761698c2021-10-03T11:51:06ZengNature Publishing GroupNature Communications2041-17232021-09-0112111410.1038/s41467-021-25976-8ECNet is an evolutionary context-integrated deep learning framework for protein engineeringYunan Luo0Guangde Jiang1Tianhao Yu2Yang Liu3Lam Vo4Hantian Ding5Yufeng Su6Wesley Wei Qian7Huimin Zhao8Jian Peng9Department of Computer Science, University of Illinois at Urbana-ChampaignDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-ChampaignDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-ChampaignDepartment of Computer Science, University of Illinois at Urbana-ChampaignDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-ChampaignDepartment of Computer Science, University of Illinois at Urbana-ChampaignDepartment of Computer Science, University of Illinois at Urbana-ChampaignDepartment of Computer Science, University of Illinois at Urbana-ChampaignDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-ChampaignDepartment of Computer Science, University of Illinois at Urbana-ChampaignProtein engineering is an active area of research in which machine learning has proven quite powerful. Here, the authors present a deep learning method that integrates both general and protein-specific sequence representations to improve the engineering of one’s protein of interest.https://doi.org/10.1038/s41467-021-25976-8
collection DOAJ
language English
format Article
sources DOAJ
author Yunan Luo
Guangde Jiang
Tianhao Yu
Yang Liu
Lam Vo
Hantian Ding
Yufeng Su
Wesley Wei Qian
Huimin Zhao
Jian Peng
spellingShingle Yunan Luo
Guangde Jiang
Tianhao Yu
Yang Liu
Lam Vo
Hantian Ding
Yufeng Su
Wesley Wei Qian
Huimin Zhao
Jian Peng
ECNet is an evolutionary context-integrated deep learning framework for protein engineering
Nature Communications
author_facet Yunan Luo
Guangde Jiang
Tianhao Yu
Yang Liu
Lam Vo
Hantian Ding
Yufeng Su
Wesley Wei Qian
Huimin Zhao
Jian Peng
author_sort Yunan Luo
title ECNet is an evolutionary context-integrated deep learning framework for protein engineering
title_short ECNet is an evolutionary context-integrated deep learning framework for protein engineering
title_full ECNet is an evolutionary context-integrated deep learning framework for protein engineering
title_fullStr ECNet is an evolutionary context-integrated deep learning framework for protein engineering
title_full_unstemmed ECNet is an evolutionary context-integrated deep learning framework for protein engineering
title_sort ecnet is an evolutionary context-integrated deep learning framework for protein engineering
publisher Nature Publishing Group
series Nature Communications
issn 2041-1723
publishDate 2021-09-01
description Protein engineering is an active area of research in which machine learning has proven quite powerful. Here, the authors present a deep learning method that integrates both general and protein-specific sequence representations to improve the engineering of one’s protein of interest.
url https://doi.org/10.1038/s41467-021-25976-8
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