High-pressure polymorphism in pyridine

• Main Authors: Nico Giordano, Christine M. Beavers, Branton J. Campbell, Václav Eigner, Eugene Gregoryanz, Willliam G. Marshall, Miriam Peña-Álvarez, Simon J. Teat, Cara E. Vennari, Simon Parsons
• Format: Article
• Language: English
• Published: International Union of Crystallography 2020-01-01
• Series: IUCrJ
• Subjects: polymorphism; pressure; in situ crystallization; phase transitions
• Online Access: http://scripts.iucr.org/cgi-bin/paper?S2052252519015616

Single crystals of the high-pressure phases II and III of pyridine have been obtained by in situ crystallization at 1.09 and 1.69 GPa, revealing the crystal structure of phase III for the first time using X-ray diffraction. Phase II crystallizes in P212121 with Z′ = 1 and phase III in P41212 with Z′ = ½. Neutron powder diffraction experiments using pyridine-d5 establish approximate equations of state of both phases. The space group and unit-cell dimensions of phase III are similar to the structures of other simple compounds with C2v molecular symmetry, and the phase becomes stable at high pressure because it is topologically close-packed, resulting in a lower molar volume than the topologically body-centred cubic phase II. Phases II and III have been observed previously by Raman spectroscopy, but have been mis-identified or inconsistently named. Raman spectra collected on the same samples as used in the X-ray experiments establish the vibrational characteristics of both phases unambiguously. The pyridine molecules interact in both phases through CH...π and CH...N interactions. The nature of individual contacts is preserved through the phase transition between phases III and II, which occurs on decompression. A combination of rigid-body symmetry mode analysis and density functional theory calculations enables the soft vibrational lattice mode which governs the transformation to be identified.