Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment
Proteomics is often hindered by the lack of protein sequence database particularly for non-model species such as Persicaria minor herbs. An integrative approach called proteomics informed by transcriptomics is possible [1], in which translated transcriptome sequence database is used as the protein s...
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doaj-0c9fb56043a44585b94076b0bb86fed92020-11-25T00:09:21ZengElsevierData in Brief2352-34092018-02-011610911094Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatmentWan Mohd Aizat0Sarah Ibrahim1Reyhaneh Rahnamaie-Tajadod2Kok-Keong Loke3Hoe-Han Goh4Normah Mohd Noor5Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaInstitute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaInstitute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaInstitute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaInstitute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaCorresponding author.; Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaProteomics is often hindered by the lack of protein sequence database particularly for non-model species such as Persicaria minor herbs. An integrative approach called proteomics informed by transcriptomics is possible [1], in which translated transcriptome sequence database is used as the protein sequence database. In this current study, the proteome profile were profiled using SWATH-MS technology complemented with documented transcriptome profiling [2], the first such report in this tropical herb. The plant was also elicited using a phytohormone, methyl jasmonate (MeJA) and protein changes were elucidated using label-free quantification of SWATH-MS to understand the role of such signal molecule in this herbal species. The mass spectrometry proteomics data was deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD005749. This data article refers to the article entitled “Proteomics (SWATH-MS)-informed by transcriptomics approach of Persicaria minor leaves upon methyl jasmonate elicitation” [3].http://www.sciencedirect.com/science/article/pii/S2352340917305036 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Wan Mohd Aizat Sarah Ibrahim Reyhaneh Rahnamaie-Tajadod Kok-Keong Loke Hoe-Han Goh Normah Mohd Noor |
spellingShingle |
Wan Mohd Aizat Sarah Ibrahim Reyhaneh Rahnamaie-Tajadod Kok-Keong Loke Hoe-Han Goh Normah Mohd Noor Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment Data in Brief |
author_facet |
Wan Mohd Aizat Sarah Ibrahim Reyhaneh Rahnamaie-Tajadod Kok-Keong Loke Hoe-Han Goh Normah Mohd Noor |
author_sort |
Wan Mohd Aizat |
title |
Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment |
title_short |
Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment |
title_full |
Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment |
title_fullStr |
Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment |
title_full_unstemmed |
Extensive mass spectrometry proteomics data of Persicaria minor herb upon methyl jasmonate treatment |
title_sort |
extensive mass spectrometry proteomics data of persicaria minor herb upon methyl jasmonate treatment |
publisher |
Elsevier |
series |
Data in Brief |
issn |
2352-3409 |
publishDate |
2018-02-01 |
description |
Proteomics is often hindered by the lack of protein sequence database particularly for non-model species such as Persicaria minor herbs. An integrative approach called proteomics informed by transcriptomics is possible [1], in which translated transcriptome sequence database is used as the protein sequence database. In this current study, the proteome profile were profiled using SWATH-MS technology complemented with documented transcriptome profiling [2], the first such report in this tropical herb. The plant was also elicited using a phytohormone, methyl jasmonate (MeJA) and protein changes were elucidated using label-free quantification of SWATH-MS to understand the role of such signal molecule in this herbal species. The mass spectrometry proteomics data was deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD005749. This data article refers to the article entitled “Proteomics (SWATH-MS)-informed by transcriptomics approach of Persicaria minor leaves upon methyl jasmonate elicitation” [3]. |
url |
http://www.sciencedirect.com/science/article/pii/S2352340917305036 |
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