Clustering of resting state networks.

The goal of the study was to demonstrate a hierarchical structure of resting state activity in the healthy brain using a data-driven clustering algorithm.The fuzzy-c-means clustering algorithm was applied to resting state fMRI data in cortical and subcortical gray matter from two groups acquired sep...

Full description

Bibliographic Details
Main Authors: Megan H Lee, Carl D Hacker, Abraham Z Snyder, Maurizio Corbetta, Dongyang Zhang, Eric C Leuthardt, Joshua S Shimony
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2012-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC3392237?pdf=render
id doaj-0f07047f76ea4c658b8294d792e50ce8
record_format Article
spelling doaj-0f07047f76ea4c658b8294d792e50ce82020-11-25T01:42:55ZengPublic Library of Science (PLoS)PLoS ONE1932-62032012-01-0177e4037010.1371/journal.pone.0040370Clustering of resting state networks.Megan H LeeCarl D HackerAbraham Z SnyderMaurizio CorbettaDongyang ZhangEric C LeuthardtJoshua S ShimonyThe goal of the study was to demonstrate a hierarchical structure of resting state activity in the healthy brain using a data-driven clustering algorithm.The fuzzy-c-means clustering algorithm was applied to resting state fMRI data in cortical and subcortical gray matter from two groups acquired separately, one of 17 healthy individuals and the second of 21 healthy individuals. Different numbers of clusters and different starting conditions were used. A cluster dispersion measure determined the optimal numbers of clusters. An inner product metric provided a measure of similarity between different clusters. The two cluster result found the task-negative and task-positive systems. The cluster dispersion measure was minimized with seven and eleven clusters. Each of the clusters in the seven and eleven cluster result was associated with either the task-negative or task-positive system. Applying the algorithm to find seven clusters recovered previously described resting state networks, including the default mode network, frontoparietal control network, ventral and dorsal attention networks, somatomotor, visual, and language networks. The language and ventral attention networks had significant subcortical involvement. This parcellation was consistently found in a large majority of algorithm runs under different conditions and was robust to different methods of initialization.The clustering of resting state activity using different optimal numbers of clusters identified resting state networks comparable to previously obtained results. This work reinforces the observation that resting state networks are hierarchically organized.http://europepmc.org/articles/PMC3392237?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Megan H Lee
Carl D Hacker
Abraham Z Snyder
Maurizio Corbetta
Dongyang Zhang
Eric C Leuthardt
Joshua S Shimony
spellingShingle Megan H Lee
Carl D Hacker
Abraham Z Snyder
Maurizio Corbetta
Dongyang Zhang
Eric C Leuthardt
Joshua S Shimony
Clustering of resting state networks.
PLoS ONE
author_facet Megan H Lee
Carl D Hacker
Abraham Z Snyder
Maurizio Corbetta
Dongyang Zhang
Eric C Leuthardt
Joshua S Shimony
author_sort Megan H Lee
title Clustering of resting state networks.
title_short Clustering of resting state networks.
title_full Clustering of resting state networks.
title_fullStr Clustering of resting state networks.
title_full_unstemmed Clustering of resting state networks.
title_sort clustering of resting state networks.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2012-01-01
description The goal of the study was to demonstrate a hierarchical structure of resting state activity in the healthy brain using a data-driven clustering algorithm.The fuzzy-c-means clustering algorithm was applied to resting state fMRI data in cortical and subcortical gray matter from two groups acquired separately, one of 17 healthy individuals and the second of 21 healthy individuals. Different numbers of clusters and different starting conditions were used. A cluster dispersion measure determined the optimal numbers of clusters. An inner product metric provided a measure of similarity between different clusters. The two cluster result found the task-negative and task-positive systems. The cluster dispersion measure was minimized with seven and eleven clusters. Each of the clusters in the seven and eleven cluster result was associated with either the task-negative or task-positive system. Applying the algorithm to find seven clusters recovered previously described resting state networks, including the default mode network, frontoparietal control network, ventral and dorsal attention networks, somatomotor, visual, and language networks. The language and ventral attention networks had significant subcortical involvement. This parcellation was consistently found in a large majority of algorithm runs under different conditions and was robust to different methods of initialization.The clustering of resting state activity using different optimal numbers of clusters identified resting state networks comparable to previously obtained results. This work reinforces the observation that resting state networks are hierarchically organized.
url http://europepmc.org/articles/PMC3392237?pdf=render
work_keys_str_mv AT meganhlee clusteringofrestingstatenetworks
AT carldhacker clusteringofrestingstatenetworks
AT abrahamzsnyder clusteringofrestingstatenetworks
AT mauriziocorbetta clusteringofrestingstatenetworks
AT dongyangzhang clusteringofrestingstatenetworks
AT ericcleuthardt clusteringofrestingstatenetworks
AT joshuasshimony clusteringofrestingstatenetworks
_version_ 1725034337984839680