Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture

In this study, a novel electrogenic bacterium denoted as strain NIT-T3 of the genus <i>Desulfuromonas</i> was isolated from a graphene-oxide-reducing enrichment culture that was originally obtained from a mixture of seawater and coastal sand. Strain NIT-T3 utilized hydrogen and various o...

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Main Authors: Li Xie, Naoko Yoshida, Shun’ichi Ishii, Lingyu Meng
Format: Article
Language:English
Published: MDPI AG 2021-09-01
Series:Microorganisms
Subjects:
Online Access:https://www.mdpi.com/2076-2607/9/9/1953
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spelling doaj-0f99181b1c1147e4bf02f67af43467ab2021-09-26T00:44:14ZengMDPI AGMicroorganisms2076-26072021-09-0191953195310.3390/microorganisms9091953Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment CultureLi Xie0Naoko Yoshida1Shun’ichi Ishii2Lingyu Meng3Department of Civil Engineering, Nagoya Institute of Technology (Nitech), Nagoya 466-8555, Aichi, JapanDepartment of Civil Engineering, Nagoya Institute of Technology (Nitech), Nagoya 466-8555, Aichi, JapanInstitute for Extra-Cutting-Edge Science and Technology Avant-Garde Research (X-Star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Kanagawa, JapanDepartment of Civil Engineering, Nagoya Institute of Technology (Nitech), Nagoya 466-8555, Aichi, JapanIn this study, a novel electrogenic bacterium denoted as strain NIT-T3 of the genus <i>Desulfuromonas</i> was isolated from a graphene-oxide-reducing enrichment culture that was originally obtained from a mixture of seawater and coastal sand. Strain NIT-T3 utilized hydrogen and various organic acids as electron donors and exhibited respiration using electrodes, ferric iron, nitrate, and elemental sulfur. The strain contained C16:1ω7c, C16:0, and C15:0 as major fatty acids and MK-8, 9, and 7 as the major respiratory quinones. Strain NIT-T3 contained four 16S rRNA genes and showed 95.7% similarity to <i>Desulfuromonas</i><i>michiganensis</i> BB1<sup>T</sup>, the closest relative. The genome was 4.7 Mbp in size and encoded 76 putative <i>c</i>-type cytochromes, which included 6 unique <i>c</i>-type cytochromes (<40% identity) compared to those in the database. Based on the physiological and genetic uniqueness, and wide metabolic capability, strain NIT-T3 is proposed as a type strain of ‘<i>Desulfuromonas versatilis</i>’ sp. nov.https://www.mdpi.com/2076-2607/9/9/1953<i>Desulfuromonas</i>electrogenic bacterianitrate respirationgraphene oxide
collection DOAJ
language English
format Article
sources DOAJ
author Li Xie
Naoko Yoshida
Shun’ichi Ishii
Lingyu Meng
spellingShingle Li Xie
Naoko Yoshida
Shun’ichi Ishii
Lingyu Meng
Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
Microorganisms
<i>Desulfuromonas</i>
electrogenic bacteria
nitrate respiration
graphene oxide
author_facet Li Xie
Naoko Yoshida
Shun’ichi Ishii
Lingyu Meng
author_sort Li Xie
title Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
title_short Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
title_full Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
title_fullStr Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
title_full_unstemmed Isolation and Polyphasic Characterization of <i>Desulfuromonas versatilis</i> sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
title_sort isolation and polyphasic characterization of <i>desulfuromonas versatilis</i> sp. nov., an electrogenic bacteria capable of versatile metabolism isolated from a graphene oxide-reducing enrichment culture
publisher MDPI AG
series Microorganisms
issn 2076-2607
publishDate 2021-09-01
description In this study, a novel electrogenic bacterium denoted as strain NIT-T3 of the genus <i>Desulfuromonas</i> was isolated from a graphene-oxide-reducing enrichment culture that was originally obtained from a mixture of seawater and coastal sand. Strain NIT-T3 utilized hydrogen and various organic acids as electron donors and exhibited respiration using electrodes, ferric iron, nitrate, and elemental sulfur. The strain contained C16:1ω7c, C16:0, and C15:0 as major fatty acids and MK-8, 9, and 7 as the major respiratory quinones. Strain NIT-T3 contained four 16S rRNA genes and showed 95.7% similarity to <i>Desulfuromonas</i><i>michiganensis</i> BB1<sup>T</sup>, the closest relative. The genome was 4.7 Mbp in size and encoded 76 putative <i>c</i>-type cytochromes, which included 6 unique <i>c</i>-type cytochromes (<40% identity) compared to those in the database. Based on the physiological and genetic uniqueness, and wide metabolic capability, strain NIT-T3 is proposed as a type strain of ‘<i>Desulfuromonas versatilis</i>’ sp. nov.
topic <i>Desulfuromonas</i>
electrogenic bacteria
nitrate respiration
graphene oxide
url https://www.mdpi.com/2076-2607/9/9/1953
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