Aerial Imagery Analysis – Quantifying Appearance and Number of Sorghum Heads for Applications in Breeding and Agronomy

• Main Authors: Wei Guo, Bangyou Zheng, Andries B. Potgieter, Julien Diot, Kakeru Watanabe, Koji Noshita, David R. Jordan, Xuemin Wang, James Watson, Seishi Ninomiya, Scott C. Chapman
• Format: Article
• Language: English
• Published: Frontiers Media S.A. 2018-10-01
• Series: Frontiers in Plant Science
• Subjects: high-throughput phenotyping; UAV remote sensing; sorghum head detecting and counting; breeding field; image analysis
• Online Access: https://www.frontiersin.org/article/10.3389/fpls.2018.01544/full

Sorghum (Sorghum bicolor L. Moench) is a C4 tropical grass that plays an essential role in providing nutrition to humans and livestock, particularly in marginal rainfall environments. The timing of head development and the number of heads per unit area are key adaptation traits to consider in agronomy and breeding but are time consuming and labor intensive to measure. We propose a two-step machine-based image processing method to detect and count the number of heads from high-resolution images captured by unmanned aerial vehicles (UAVs) in a breeding trial. To demonstrate the performance of the proposed method, 52 images were manually labeled; the precision and recall of head detection were 0.87 and 0.98, respectively, and the coefficient of determination (R2) between the manual and new methods of counting was 0.84. To verify the utility of the method in breeding programs, a geolocation-based plot segmentation method was applied to pre-processed ortho-mosaic images to extract >1000 plots from original RGB images. Forty of these plots were randomly selected and labeled manually; the precision and recall of detection were 0.82 and 0.98, respectively, and the coefficient of determination between manual and algorithm counting was 0.56, with the major source of error being related to the morphology of plants resulting in heads being displayed both within and outside the plot in which the plants were sown, i.e., being allocated to a neighboring plot. Finally, the potential applications in yield estimation from UAV-based imagery from agronomy experiments and scouting of production fields are also discussed.