PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19
Summary: The molecular mechanisms of cytokine storm in patients with severe COVID-19 infections are poorly understood. To uncover these events, we performed transcriptome analyses of lung biopsies from patients with COVID-19, revealing a gene enrichment pattern similar to that of PPARγ-knockout macr...
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doaj-10ef2a619f84470189a18043b58245312020-11-25T03:52:06ZengElsevieriScience2589-00422020-10-012310101611PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19Christophe Desterke0Ali G. Turhan1Annelise Bennaceur-Griscelli2Frank Griscelli3INSERM UA9- University Paris-Saclay, Institut André Lwoff, Bâtiment A CNRS, 7 rue Guy Moquet, 94800 Villejuif, FranceINSERM UA9- University Paris-Saclay, Institut André Lwoff, Bâtiment A CNRS, 7 rue Guy Moquet, 94800 Villejuif, France; ESTeam Paris Sud, INGESTEM National IPSC Infrastructure, University Paris-Saclay, 94800 Villejuif, France; Division of Hematology, APHP-Paris Saclay University Hospitals, Le Kremlin Bicêtre 94275, Villejuif 94800, France; University Paris Saclay, Faculty of Medicine, Le Kremlin Bicêtre 94275, FranceINSERM UA9- University Paris-Saclay, Institut André Lwoff, Bâtiment A CNRS, 7 rue Guy Moquet, 94800 Villejuif, France; ESTeam Paris Sud, INGESTEM National IPSC Infrastructure, University Paris-Saclay, 94800 Villejuif, France; Division of Hematology, APHP-Paris Saclay University Hospitals, Le Kremlin Bicêtre 94275, Villejuif 94800, France; University Paris Saclay, Faculty of Medicine, Le Kremlin Bicêtre 94275, FranceINSERM UA9- University Paris-Saclay, Institut André Lwoff, Bâtiment A CNRS, 7 rue Guy Moquet, 94800 Villejuif, France; ESTeam Paris Sud, INGESTEM National IPSC Infrastructure, University Paris-Saclay, 94800 Villejuif, France; University of Paris, Faculty Sorbonne Paris Cité, Faculté des Sciences Pharmaceutiques et Biologiques, Paris, France; Gustave-Roussy Cancer Institute, Department of Biopathology, 94800 Villejuif, France; Corresponding authorSummary: The molecular mechanisms of cytokine storm in patients with severe COVID-19 infections are poorly understood. To uncover these events, we performed transcriptome analyses of lung biopsies from patients with COVID-19, revealing a gene enrichment pattern similar to that of PPARγ-knockout macrophages. Single-cell gene expression analysis of bronchoalveolar lavage fluids revealed a characteristic trajectory of PPARγ-related disturbance in the CD14+/CD16+ cells. We identified a correlation with the disease severity and the reduced expression of several members of the PPARγ complex such as EP300, RXRA, RARA, SUMO1, NR3C1, and CCDC88A. ChIP-seq analyses confirmed repression of the PPARγ-RXRA-NR3C1 cistrome in COVID-19 lung samples. Further analysis of protein-protein networks highlighted an interaction between the PPARγ-associated protein SUMO1 and a nucleoprotein of the SARS virus. Overall, these results demonstrate for the first time the involvement of the PPARγ complex in severe COVID-19 lung disease and suggest strongly its role in the major monocyte/macrophage-mediated inflammatory storm.http://www.sciencedirect.com/science/article/pii/S2589004220308038ImmunologyViral MicrobiologyTranscriptomics |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Christophe Desterke Ali G. Turhan Annelise Bennaceur-Griscelli Frank Griscelli |
spellingShingle |
Christophe Desterke Ali G. Turhan Annelise Bennaceur-Griscelli Frank Griscelli PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 iScience Immunology Viral Microbiology Transcriptomics |
author_facet |
Christophe Desterke Ali G. Turhan Annelise Bennaceur-Griscelli Frank Griscelli |
author_sort |
Christophe Desterke |
title |
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 |
title_short |
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 |
title_full |
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 |
title_fullStr |
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 |
title_full_unstemmed |
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19 |
title_sort |
pparγ cistrome repression during activation of lung monocyte-macrophages in severe covid-19 |
publisher |
Elsevier |
series |
iScience |
issn |
2589-0042 |
publishDate |
2020-10-01 |
description |
Summary: The molecular mechanisms of cytokine storm in patients with severe COVID-19 infections are poorly understood. To uncover these events, we performed transcriptome analyses of lung biopsies from patients with COVID-19, revealing a gene enrichment pattern similar to that of PPARγ-knockout macrophages. Single-cell gene expression analysis of bronchoalveolar lavage fluids revealed a characteristic trajectory of PPARγ-related disturbance in the CD14+/CD16+ cells. We identified a correlation with the disease severity and the reduced expression of several members of the PPARγ complex such as EP300, RXRA, RARA, SUMO1, NR3C1, and CCDC88A. ChIP-seq analyses confirmed repression of the PPARγ-RXRA-NR3C1 cistrome in COVID-19 lung samples. Further analysis of protein-protein networks highlighted an interaction between the PPARγ-associated protein SUMO1 and a nucleoprotein of the SARS virus. Overall, these results demonstrate for the first time the involvement of the PPARγ complex in severe COVID-19 lung disease and suggest strongly its role in the major monocyte/macrophage-mediated inflammatory storm. |
topic |
Immunology Viral Microbiology Transcriptomics |
url |
http://www.sciencedirect.com/science/article/pii/S2589004220308038 |
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