Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis
We evaluated whether polymorphisms in interleukin (IL-1) gene cluster (IL-1 alpha [IL-1A], IL-1 beta [IL-1B], and IL-1 receptor antagonist [IL-1RN]) are associated with end stage renal disease (ESRD). A total of 258 ESRD patients and 569 ethnicity matched controls were examined for IL-1 gene cluster...
Main Authors: | , , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Wolters Kluwer Medknow Publications
2015-01-01
|
Series: | Indian Journal of Nephrology |
Subjects: | |
Online Access: | http://www.indianjnephrol.org/article.asp?issn=0971-4065;year=2015;volume=25;issue=1;spage=34;epage=42;aulast=Tripathi |
id |
doaj-13257902b2114ec3bdb542f4b2ec34a9 |
---|---|
record_format |
Article |
spelling |
doaj-13257902b2114ec3bdb542f4b2ec34a92020-11-25T02:25:22ZengWolters Kluwer Medknow PublicationsIndian Journal of Nephrology0971-40651998-36622015-01-01251344210.4103/0971-4065.135350Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysisG TripathiD RangaswamyM BorkarN PrasadR K SharmaS N SankhwarS AgrawalWe evaluated whether polymorphisms in interleukin (IL-1) gene cluster (IL-1 alpha [IL-1A], IL-1 beta [IL-1B], and IL-1 receptor antagonist [IL-1RN]) are associated with end stage renal disease (ESRD). A total of 258 ESRD patients and 569 ethnicity matched controls were examined for IL-1 gene cluster. These were genotyped for five single-nucleotide gene polymorphisms in the IL-1A, IL-1B and IL-1RN genes and a variable number of tandem repeats (VNTR) in the IL-1RN. The IL-1B − 3953 and IL-1RN + 8006 polymorphism frequencies were significantly different between the two groups. At IL-1B, the T allele of − 3953C/T was increased among ESRD (P = 0.0001). A logistic regression model demonstrated that two repeat (240 base pair [bp]) of the IL-1Ra VNTR polymorphism was associated with ESRD (P = 0.0001). The C/C/C/C/C/1 haplotype was more prevalent in ESRD = 0.007). No linkage disequilibrium (LD) was observed between six loci of IL-1 gene. We further conducted a meta-analysis of existing studies and found that there is a strong association of IL-1 RN VNTR 86 bp repeat polymorphism with susceptibility to ESRD (odds ratio = 2.04, 95% confidence interval = 1.48-2.82; P = 0.000). IL-1B − 5887, +8006 and the IL-1RN VNTR polymorphisms have been implicated as potential risk factors for ESRD. The meta-analysis showed a strong association of IL-1RN 86 bp VNTR polymorphism with susceptibility to ESRD.http://www.indianjnephrol.org/article.asp?issn=0971-4065;year=2015;volume=25;issue=1;spage=34;epage=42;aulast=TripathiEnd stage renal diseasehaplotypeinterleukin-1 gene clustermeta-analysispro-inflammatoryvariable number of tandem repeats |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
G Tripathi D Rangaswamy M Borkar N Prasad R K Sharma S N Sankhwar S Agrawal |
spellingShingle |
G Tripathi D Rangaswamy M Borkar N Prasad R K Sharma S N Sankhwar S Agrawal Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis Indian Journal of Nephrology End stage renal disease haplotype interleukin-1 gene cluster meta-analysis pro-inflammatory variable number of tandem repeats |
author_facet |
G Tripathi D Rangaswamy M Borkar N Prasad R K Sharma S N Sankhwar S Agrawal |
author_sort |
G Tripathi |
title |
Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis |
title_short |
Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis |
title_full |
Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis |
title_fullStr |
Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis |
title_full_unstemmed |
Interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: An association and meta‑analysis |
title_sort |
interleukin‑1 gene cluster variants in hemodialysis patients with end stage renal disease: an association and meta‑analysis |
publisher |
Wolters Kluwer Medknow Publications |
series |
Indian Journal of Nephrology |
issn |
0971-4065 1998-3662 |
publishDate |
2015-01-01 |
description |
We evaluated whether polymorphisms in interleukin (IL-1) gene cluster (IL-1 alpha [IL-1A], IL-1 beta [IL-1B], and IL-1 receptor antagonist [IL-1RN]) are associated with end stage renal disease (ESRD). A total of 258 ESRD patients and 569 ethnicity matched controls were examined for IL-1 gene cluster. These were genotyped for five single-nucleotide gene polymorphisms in the IL-1A, IL-1B and IL-1RN genes and a variable number of tandem repeats (VNTR) in the IL-1RN. The IL-1B − 3953 and IL-1RN + 8006 polymorphism frequencies were significantly different between the two groups. At IL-1B, the T allele of − 3953C/T was increased among ESRD (P = 0.0001). A logistic regression model demonstrated that two repeat (240 base pair [bp]) of the IL-1Ra VNTR polymorphism was associated with ESRD (P = 0.0001). The C/C/C/C/C/1 haplotype was more prevalent in ESRD = 0.007). No linkage disequilibrium (LD) was observed between six loci of IL-1 gene. We further conducted a meta-analysis of existing studies and found that there is a strong association of IL-1 RN VNTR 86 bp repeat polymorphism with susceptibility to ESRD (odds ratio = 2.04, 95% confidence interval = 1.48-2.82; P = 0.000). IL-1B − 5887, +8006 and the IL-1RN VNTR polymorphisms have been implicated as potential risk factors for ESRD. The meta-analysis showed a strong association of IL-1RN 86 bp VNTR polymorphism with susceptibility to ESRD. |
topic |
End stage renal disease haplotype interleukin-1 gene cluster meta-analysis pro-inflammatory variable number of tandem repeats |
url |
http://www.indianjnephrol.org/article.asp?issn=0971-4065;year=2015;volume=25;issue=1;spage=34;epage=42;aulast=Tripathi |
work_keys_str_mv |
AT gtripathi interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT drangaswamy interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT mborkar interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT nprasad interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT rksharma interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT snsankhwar interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis AT sagrawal interleukin1geneclustervariantsinhemodialysispatientswithendstagerenaldiseaseanassociationandmetaanalysis |
_version_ |
1724851618121252864 |