Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific

Species delimitation of corals is one of the most challenging issues in coral reef ecology and conservation. Morphology can obscure evolutionary relationships, and molecular datasets are consistently revealing greater within-species diversity than currently understood. Most phylogenetic studies, how...

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Main Authors: Hiroki Taninaka, Davide Maggioni, Davide Seveso, Danwei Huang, Abram Townsend, Zoe T. Richards, Sen-Lin Tang, Naohisa Wada, Taisei Kikuchi, Hideaki Yuasa, Megumi Kanai, Stéphane De Palmas, Niphon Phongsuwan, Nina Yasuda
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-08-01
Series:Frontiers in Marine Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fmars.2021.714662/full
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author Hiroki Taninaka
Davide Maggioni
Davide Maggioni
Davide Seveso
Davide Seveso
Danwei Huang
Danwei Huang
Danwei Huang
Abram Townsend
Zoe T. Richards
Zoe T. Richards
Sen-Lin Tang
Naohisa Wada
Taisei Kikuchi
Hideaki Yuasa
Megumi Kanai
Stéphane De Palmas
Stéphane De Palmas
Stéphane De Palmas
Niphon Phongsuwan
Nina Yasuda
spellingShingle Hiroki Taninaka
Davide Maggioni
Davide Maggioni
Davide Seveso
Davide Seveso
Danwei Huang
Danwei Huang
Danwei Huang
Abram Townsend
Zoe T. Richards
Zoe T. Richards
Sen-Lin Tang
Naohisa Wada
Taisei Kikuchi
Hideaki Yuasa
Megumi Kanai
Stéphane De Palmas
Stéphane De Palmas
Stéphane De Palmas
Niphon Phongsuwan
Nina Yasuda
Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
Frontiers in Marine Science
MIG-seq
single nucleotide polymorphism
Helioporadae
octocoral
species delimitation
coral reef
author_facet Hiroki Taninaka
Davide Maggioni
Davide Maggioni
Davide Seveso
Davide Seveso
Danwei Huang
Danwei Huang
Danwei Huang
Abram Townsend
Zoe T. Richards
Zoe T. Richards
Sen-Lin Tang
Naohisa Wada
Taisei Kikuchi
Hideaki Yuasa
Megumi Kanai
Stéphane De Palmas
Stéphane De Palmas
Stéphane De Palmas
Niphon Phongsuwan
Nina Yasuda
author_sort Hiroki Taninaka
title Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
title_short Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
title_full Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
title_fullStr Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
title_full_unstemmed Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
title_sort phylogeography of blue corals (genus heliopora) across the indo-west pacific
publisher Frontiers Media S.A.
series Frontiers in Marine Science
issn 2296-7745
publishDate 2021-08-01
description Species delimitation of corals is one of the most challenging issues in coral reef ecology and conservation. Morphology can obscure evolutionary relationships, and molecular datasets are consistently revealing greater within-species diversity than currently understood. Most phylogenetic studies, however, have examined narrow geographic areas and phylogeographic expansion is required to obtain more robust interpretations of within- and among- species relationships. In the case of the blue coral Heliopora, there are currently two valid species (H. coerulea and H. hiberniana) as evidenced by integrated genetic and morphological analyses in northwestern Australia. There are also two distinct genetic lineages of H. coerulea in the Kuroshio Current region that are morphologically and reproductively different from each other. Sampling from all Heliopora spp. across the Indo-Pacific is essential to obtain a more complete picture of phylogeographic patterns. To examine phylogenetic relationships within the genus Heliopora, we applied Multiplexed inter simple sequence repeat (ISSR) Genotyping by sequencing (MIG-seq) on > 1287 colonies across the Indo-West Pacific. Maximum likelihood phylogenetic trees indicated the examined Heliopora samples comprise three genetically distinct groups: H. coerulea group, H. hiberniana group, and a new undescribed Heliopora sp. group with further subdivisions within each group. Geographic structuring is evident among the three species with H. hiberniana group found in the Indo-Malay Archipelago and biased toward the Indian Ocean whilst Heliopora sp. was only found in the Kuroshio Current region and Singapore, indicating that this taxon is distributed in the western Pacific and the Indo-Malay Archipelago. Heliopora coerulea has a wider distribution, being across the Indian Ocean and western Pacific. This study highlights the effectiveness of phylogenetic analysis using genome-wide markers and the importance of examining populations across their distribution range to understand localized genetic structure and speciation patterns of corals.
topic MIG-seq
single nucleotide polymorphism
Helioporadae
octocoral
species delimitation
coral reef
url https://www.frontiersin.org/articles/10.3389/fmars.2021.714662/full
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spelling doaj-146f8dc150ba479aa2ccc68a8f6e3a0e2021-08-13T16:09:12ZengFrontiers Media S.A.Frontiers in Marine Science2296-77452021-08-01810.3389/fmars.2021.714662714662Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West PacificHiroki Taninaka0Davide Maggioni1Davide Maggioni2Davide Seveso3Davide Seveso4Danwei Huang5Danwei Huang6Danwei Huang7Abram Townsend8Zoe T. Richards9Zoe T. Richards10Sen-Lin Tang11Naohisa Wada12Taisei Kikuchi13Hideaki Yuasa14Megumi Kanai15Stéphane De Palmas16Stéphane De Palmas17Stéphane De Palmas18Niphon Phongsuwan19Nina Yasuda20Interdisciplinary Graduate School of Agriculture and Engineering, University of Miyazaki, Miyazaki, JapanDepartment of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Milan, ItalyMarine Research and High Education Center (MaRHE Center), Faafu Magoodhoo, MaldivesDepartment of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Milan, ItalyMarine Research and High Education Center (MaRHE Center), Faafu Magoodhoo, MaldivesDepartment of Biological Sciences, National University of Singapore, Singapore, SingaporeTropical Marine Science Institute, National University of Singapore, Singapore, SingaporeCentre for Nature-based Climate Solutions, National University of Singapore, Singapore, SingaporeDivision of Natural Sciences, University of Guam, Mangilao, GU, United StatesCoral Conservation and Research Group, Trace and Environmental DNA Laboratory, School of Molecular and Life Sciences, Curtin University, Bentley, WA, AustraliaCollections and Research, Western Australian Museum, Welshpool, WA, Australia0Biodiversity Research Center, Academia Sinica, Taipei, Taiwan0Biodiversity Research Center, Academia Sinica, Taipei, Taiwan1Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan2Department of Life Science and Technology, School of Life Sciences and Technology, Tokyo Institute of Technology, Tokyo, Japan3Okinawa Environment Science Center, Urasoe, Japan0Biodiversity Research Center, Academia Sinica, Taipei, Taiwan4Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan5Institute of Oceanography, National Taiwan University, Taipei, Taiwan6Phuket Marine Biological Center, Muang, Thailand7Faculty of Agriculture, University of Miyazaki, Miyazaki, JapanSpecies delimitation of corals is one of the most challenging issues in coral reef ecology and conservation. Morphology can obscure evolutionary relationships, and molecular datasets are consistently revealing greater within-species diversity than currently understood. Most phylogenetic studies, however, have examined narrow geographic areas and phylogeographic expansion is required to obtain more robust interpretations of within- and among- species relationships. In the case of the blue coral Heliopora, there are currently two valid species (H. coerulea and H. hiberniana) as evidenced by integrated genetic and morphological analyses in northwestern Australia. There are also two distinct genetic lineages of H. coerulea in the Kuroshio Current region that are morphologically and reproductively different from each other. Sampling from all Heliopora spp. across the Indo-Pacific is essential to obtain a more complete picture of phylogeographic patterns. To examine phylogenetic relationships within the genus Heliopora, we applied Multiplexed inter simple sequence repeat (ISSR) Genotyping by sequencing (MIG-seq) on > 1287 colonies across the Indo-West Pacific. Maximum likelihood phylogenetic trees indicated the examined Heliopora samples comprise three genetically distinct groups: H. coerulea group, H. hiberniana group, and a new undescribed Heliopora sp. group with further subdivisions within each group. Geographic structuring is evident among the three species with H. hiberniana group found in the Indo-Malay Archipelago and biased toward the Indian Ocean whilst Heliopora sp. was only found in the Kuroshio Current region and Singapore, indicating that this taxon is distributed in the western Pacific and the Indo-Malay Archipelago. Heliopora coerulea has a wider distribution, being across the Indian Ocean and western Pacific. This study highlights the effectiveness of phylogenetic analysis using genome-wide markers and the importance of examining populations across their distribution range to understand localized genetic structure and speciation patterns of corals.https://www.frontiersin.org/articles/10.3389/fmars.2021.714662/fullMIG-seqsingle nucleotide polymorphismHelioporadaeoctocoralspecies delimitationcoral reef