Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep

Body weight is an important economic trait for sheep and it is vital for their successful production and breeding. Therefore, identifying the genomic regions and biological pathways that contribute to understanding variability in body weight traits is significant for selection purposes. In this stud...

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Main Authors: Zengkui Lu, Yaojing Yue, Chao Yuan, Jianbin Liu, Zhiqiang Chen, Chune Niu, Xiaoping Sun, Shaohua Zhu, Hongchang Zhao, Tingting Guo, Bohui Yang
Format: Article
Language:English
Published: MDPI AG 2020-01-01
Series:Animals
Subjects:
Online Access:https://www.mdpi.com/2076-2615/10/1/170
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spelling doaj-17f03cec3f5f484599eb48ff6dedb4ad2020-11-25T01:42:25ZengMDPI AGAnimals2076-26152020-01-0110117010.3390/ani10010170ani10010170Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool SheepZengkui Lu0Yaojing Yue1Chao Yuan2Jianbin Liu3Zhiqiang Chen4Chune Niu5Xiaoping Sun6Shaohua Zhu7Hongchang Zhao8Tingting Guo9Bohui Yang10Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaNovogene Bioinformatics Institute, Beijing 100029, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, ChinaBody weight is an important economic trait for sheep and it is vital for their successful production and breeding. Therefore, identifying the genomic regions and biological pathways that contribute to understanding variability in body weight traits is significant for selection purposes. In this study, the genome-wide associations of birth, weaning, yearling, and adult weights of 460 fine-wool sheep were determined using resequencing technology. The results showed that 113 single nucleotide polymorphisms (SNPs) reached the genome-wide significance levels for the four body weight traits and 30 genes were annotated effectively, including <i>AADACL3</i>, <i>VGF</i>, <i>NPC1</i>, and <i>SERPINA12</i>. The genes annotated by these SNPs significantly enriched 78 gene ontology terms and 25 signaling pathways, and were found to mainly participate in skeletal muscle development and lipid metabolism. These genes can be used as candidate genes for body weight in sheep, and provide useful information for the production and genomic selection of Chinese fine-wool sheep.https://www.mdpi.com/2076-2615/10/1/170body weightgenome-wide association studyfine-wool sheepgenomic analysisfunctional analysis
collection DOAJ
language English
format Article
sources DOAJ
author Zengkui Lu
Yaojing Yue
Chao Yuan
Jianbin Liu
Zhiqiang Chen
Chune Niu
Xiaoping Sun
Shaohua Zhu
Hongchang Zhao
Tingting Guo
Bohui Yang
spellingShingle Zengkui Lu
Yaojing Yue
Chao Yuan
Jianbin Liu
Zhiqiang Chen
Chune Niu
Xiaoping Sun
Shaohua Zhu
Hongchang Zhao
Tingting Guo
Bohui Yang
Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
Animals
body weight
genome-wide association study
fine-wool sheep
genomic analysis
functional analysis
author_facet Zengkui Lu
Yaojing Yue
Chao Yuan
Jianbin Liu
Zhiqiang Chen
Chune Niu
Xiaoping Sun
Shaohua Zhu
Hongchang Zhao
Tingting Guo
Bohui Yang
author_sort Zengkui Lu
title Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
title_short Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
title_full Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
title_fullStr Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
title_full_unstemmed Genome-Wide Association Study of Body Weight Traits in Chinese Fine-Wool Sheep
title_sort genome-wide association study of body weight traits in chinese fine-wool sheep
publisher MDPI AG
series Animals
issn 2076-2615
publishDate 2020-01-01
description Body weight is an important economic trait for sheep and it is vital for their successful production and breeding. Therefore, identifying the genomic regions and biological pathways that contribute to understanding variability in body weight traits is significant for selection purposes. In this study, the genome-wide associations of birth, weaning, yearling, and adult weights of 460 fine-wool sheep were determined using resequencing technology. The results showed that 113 single nucleotide polymorphisms (SNPs) reached the genome-wide significance levels for the four body weight traits and 30 genes were annotated effectively, including <i>AADACL3</i>, <i>VGF</i>, <i>NPC1</i>, and <i>SERPINA12</i>. The genes annotated by these SNPs significantly enriched 78 gene ontology terms and 25 signaling pathways, and were found to mainly participate in skeletal muscle development and lipid metabolism. These genes can be used as candidate genes for body weight in sheep, and provide useful information for the production and genomic selection of Chinese fine-wool sheep.
topic body weight
genome-wide association study
fine-wool sheep
genomic analysis
functional analysis
url https://www.mdpi.com/2076-2615/10/1/170
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