Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon

We report the comprehensive identification of periodic genes and their network inference, based on a gene co-expression analysis and an Auto-Regressive eXogenous (ARX) model with a group smoothly clipped absolute deviation (SCAD) method using a time-series transcriptome dataset in a model grass, Bra...

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Bibliographic Details
Main Authors: Satoru Koda, Yoshihiko Onda, Hidetoshi Matsui, Kotaro Takahagi, Yukiko Uehara-Yamaguchi, Minami Shimizu, Komaki Inoue, Takuhiro Yoshida, Tetsuya Sakurai, Hiroshi Honda, Shinto Eguchi, Ryuei Nishii, Keiichi Mochida
Format: Article
Language:English
Published: Frontiers Media S.A. 2017-11-01
Series:Frontiers in Plant Science
Subjects:
Brachypodium distachyon
transcriptome
autoregressive with exogenous variables (ARX) model
group-SCAD
gene network inference
Online Access:http://journal.frontiersin.org/article/10.3389/fpls.2017.02055/full

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