FPGA-based protein sequence alignment : A review

FPGA-based protein sequence alignment : A review

Sequence alignment have been optimized using several techniques in order to accelerate the computation time to obtain the optimal score by implementing DP-based algorithm into hardware such as FPGA-based platform. During hardware implementation, there will be performance challenges such as the frequ...

Full description

Bibliographic Details
Main Authors:	Md. Isa Mohd. Nazrin, Ku Muhsen Ku Noor Dhaniah, Saiful Nurdin Dayana, Ahmad Muhammad Imran, Zainol Murad Sohiful Anuar, Mohyar Shaiful Nizam, Harun Azizi, Hussin Razaidi
Format:	Article
Language:	English
Published:	EDP Sciences 2017-01-01
Series:	EPJ Web of Conferences
Online Access:	https://doi.org/10.1051/epjconf/201716201075

Similar Items

On-chip temperature-based digital signal processing for customized wireless microcontroller
by: Faezal Siti Farhah Razanah, et al.
Published: (2017-01-01)

High Performance Systolic Array Core Architecture Design for DNA Sequencer
by: Saiful Nurdin Dayana, et al.
Published: (2018-01-01)

A statistical study of time dependent reliability degradation of nanoscale MOSFET devices
by: Hussin, Razaidi
Published: (2017)

Architectural design proposal for real time clock for wireless microcontroller unit
by: Mohd Alias Muhammad Nor Azwan, et al.
Published: (2017-01-01)

Carbon Nanotube and Resistive Random Access Memory Based Unbalanced Ternary Logic Gates and Basic Arithmetic Circuits
by: Furqan Zahoor, et al.
Published: (2020-01-01)

A VERY LOW-DROPOUT VOLTAGE REGULATOR IN 0.18-mu M CMOS TECHNOLOGY FOR POWER MANAGEMENT SYSTEM
by: Harun, A, et al.
Published: (2020)

Speed and area analysis on hierarchy multiplier
by: Wong Moon Cheng, et al.
Published: (2017-01-01)

Implementation and Verification of Biological Sequence Alignment in FPGA
by: GUAN-JHIHFU, et al.
Published: (2017)

Design of CMOS Low-Dropout Voltage Regulator for Power Management Integrated Circuit in 0.18-mu m Technology
by: Harun, A, et al.
Published: (2020)

FPGA Implementation of a Desynchronized Control Circuit
by: Shih-Lung Ku, et al.
Published: (2007)

Implementation and Verification of Sequence Comparison Alignment Based on FPGA
by: Chao-ChiaChen, et al.
Published: (2019)

AIS alignment in small and medium sized firms
by: Ismail, Noor Azizi
Published: (2004)

Single-Pass Covariance Matrix Calculation on a Hybrid FPGA/CPU Platform
by: Arnold Lukas On, et al.
Published: (2020-01-01)

FPGA-based Power Quality Transient Event Detector
by: Ming-Syuan Ku, et al.
Published: (2011)

FPGA and DSP Realization of an Adaptive MIMO-OFDM System
by: Chung-Ta Ku, et al.
Published: (2005)

Accelerating System-Level Simulation for Manycore-based SoC by FPGA
by: Ku, Weichun, et al.
Published: (2011)

FPGA Implementation of Evaluating Power System's Frequency Response Characteristic
by: Ku-Hsien Lin, et al.
Published: (2005)

A very low-dropout voltage regulator in 0.18-μm CMOS technology for power management system
by: Harun, A., et al.
Published: (2020)

A High Performance FPGA-Based Accelerator for Biological Sequence Alignment
by: Chin-ChungPan, et al.
Published: (2011)

Refractive errors and biometry of primary angle-closure disease in a mixed Malaysian population
by: Jelinar Mohamed-Noor, et al.
Published: (2017-08-01)

FPGA Implementation of a Multimode Transmultiplexer
by: Azizi, Kaveh
Published: (2010)

The Design and Implementation of the Fronthaul Interface Converter for 5G C-RAN Based on FPGA
by: Chung-An Ku, et al.
Published: (2019)

FPGA Implementation of Smart Recipe with IOT System based on Particle Swarm Optimization
by: KU, DA-YUN, et al.
Published: (2017)

Implementation of Interior Permanent Magnet Synchronous Motor Drive System with DSP and FPGA
by: Chien-Ping Ku, et al.
Published: (2005)

Structure-based realignment of non-coding RNAs in multiple whole genome alignments
by: Yu, Michael Ku
Published: (2011)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

An FPGA Implementation of a 40Gbps Ultra High Speed FIFO Queue - Buffer Manager
by: Chu-Sheng Ku, et al.
Published: (2008)

An Efficient Inter-FPGA Routing Exploration Environment for Multi-FPGA Systems
by: Umer Farooq, et al.
Published: (2018-01-01)

Alignment of business strategy and IT strategy in small businesses
by: Hussin, Husnayati
Published: (1998)

Influence of electric distribution network topology on harmonics
by: Samin, Shaiful Nizam
Published: (2014)

Keberkesanan program bandar selamat dari persepsi pelancong Singapura (Kajian Kes: Bandaraya Johor Bahru)
by: Anuar, Ahmad Nazrin Aris
Published: (2008)

Simple scalable nucleotic FPGA based short read aligner for exhaustive search of substitution errors
by: Fehér Péter, et al.
Published: (2015-12-01)

Design and FPGA implementation of matrix transforms for image and video processing
by: Uzun, Isa Servan
Published: (2006)

High Performance Biological Pairwise Sequence Alignment: FPGA versus GPU versus Cell BE versus GPP
by: Khaled Benkrid, et al.
Published: (2012-01-01)

A Resource Efficient Integer-Arithmetic-Only FPGA-Based CNN Accelerator for Real-Time Facial Emotion Recognition
by: Jaemyung Kim, et al.
Published: (2021-01-01)

Band alignment studies of graphene/ZnO and MoS2/WS2 heterostuctures
by: Ku, Yi Hang, et al.
Published: (2016)

FPGA-based Image Analysis System for Cotton Classing
by: Sharafat, Muhammad Imran
Published: (2007)

RTL validation methodology on high complexity wireless microcontroller using OVM technique for fast time to market
by: Muhammad Nurul Zhafirah, et al.
Published: (2017-01-01)