Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections

<i>Acinetobacter</i> spp. has gained fame from their ability to resist difficult conditions and their constant development of antimicrobial resistance. This study aimed to investigate the prevalence, susceptibility testing, OXA carbapenemase-encoding genes, and RAPD-genotyping of multidr...

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Main Authors: Waleed El-Kazzaz, Lobna Metwally, Reham Yahia, Najwa Al-Harbi, Ayat El-Taher, Helal F. Hetta
Format: Article
Language:English
Published: MDPI AG 2020-09-01
Series:Antibiotics
Subjects:
MDR
Online Access:https://www.mdpi.com/2079-6382/9/9/603
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spelling doaj-219d5db8b0474640b24a5e60b59a38a42020-11-25T03:57:04ZengMDPI AGAntibiotics2079-63822020-09-01960360310.3390/antibiotics9090603Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired InfectionsWaleed El-Kazzaz0Lobna Metwally1Reham Yahia2Najwa Al-Harbi3Ayat El-Taher4Helal F. Hetta5Molecular Microbiology Lab., Botany Department, Faculty of Science, Suez Canal University, Ismailia 41522, EgyptMicrobiology and Immunology Department, Faculty of Medicine, Suez Canal University, Ismailia 41522, EgyptBasic Sciences Department, College of Science and Health Professions, King Saud Bin Abdul Aziz University for Health Sciences, Riyadh 11481, Saudi ArabiaMolecular Microbiology Lab., King Abdul Aziz University, Riyadh 11481, Saudi ArabiaBotany Department, Faculty of Science, Suez Canal University, Ismailia 41522, EgyptDepartment of Medical Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut 71515, Egypt<i>Acinetobacter</i> spp. has gained fame from their ability to resist difficult conditions and their constant development of antimicrobial resistance. This study aimed to investigate the prevalence, susceptibility testing, OXA carbapenemase-encoding genes, and RAPD-genotyping of multidrug resistant <i>Acinetobacter baumannii</i> incriminated in hidden community-acquired infections in Egypt. The antimicrobial susceptibility testing was assessed phenotypically using Kirby–Bauer disk diffusion method. Also, Modified-Hodge test (MHT) was carried out to detect the carbapenemases production. Multiplex-PCR was used to detect the carbapenemase-encoding genes. Furthermore, the genetic relationship among the isolated strains was investigated using RAPD fingerprinting. The bacteriological examination revealed that, out of 200 Gram-negative non-fermentative isolates, 44 (22%) were identified phenotypically and biochemically as <i>Acinetobacter</i> spp. and 23 (11.5%) were molecularly confirmed as <i>A.</i><i>baumannii</i>. The retrieved <i>A.</i><i>baumannii</i> strains were isolated from urine (69%), sputum (22%), and cerebrospinal fluid (csf) (9%). The isolated <i>A. baumannii</i> strains exhibited multidrug resistance and the production rates of carbapenemases were 56.5, 60.9, and 78.3% with meropenem, imipenem, and ertapenem disks, respectively. The <i>bla</i><sub>OXA-24</sub>-like genes were the most predominant among the tested strains (65.2%), followed by <i>bla</i><sub>OXA-23</sub> (30.4%) and <i>bla</i><sub>OXA-58</sub> (17.4%), in addition, the examined strains are harbored IMP, VIM, and NDM genes with prevalence of 60.9, 43.5, and 13%, respectively, while KPC and GES genes were not detected. RAPD-PCR revealed that the examined strains are clustered into 11 different genotypes at ≥90% similarity. Briefly, to the best of our knowledge, this study is the first report concerning community-associated <i>A. baumannii</i> infections in Egypt. The high prevalence of hidden multidrug-resistant (MDR) and extensively drug-resistant (XDR) <i>A.</i><i>baumannii</i> strains associated with non-hospitalized patients raises an alarm for healthcare authorities to set strict standards to control the spread of such pathogens with high rates of morbidity and mortality.https://www.mdpi.com/2079-6382/9/9/603<i>Acinetobacter baumannii</i>antibiogramMDRcarbapenemase encoding genesRAPD-genotyping
collection DOAJ
language English
format Article
sources DOAJ
author Waleed El-Kazzaz
Lobna Metwally
Reham Yahia
Najwa Al-Harbi
Ayat El-Taher
Helal F. Hetta
spellingShingle Waleed El-Kazzaz
Lobna Metwally
Reham Yahia
Najwa Al-Harbi
Ayat El-Taher
Helal F. Hetta
Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
Antibiotics
<i>Acinetobacter baumannii</i>
antibiogram
MDR
carbapenemase encoding genes
RAPD-genotyping
author_facet Waleed El-Kazzaz
Lobna Metwally
Reham Yahia
Najwa Al-Harbi
Ayat El-Taher
Helal F. Hetta
author_sort Waleed El-Kazzaz
title Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
title_short Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
title_full Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
title_fullStr Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
title_full_unstemmed Antibiogram, Prevalence of OXA Carbapenemase Encoding Genes, and RAPD-Genotyping of Multidrug-Resistant <i>Acinetobacter baumannii</i> Incriminated in Hidden Community-Acquired Infections
title_sort antibiogram, prevalence of oxa carbapenemase encoding genes, and rapd-genotyping of multidrug-resistant <i>acinetobacter baumannii</i> incriminated in hidden community-acquired infections
publisher MDPI AG
series Antibiotics
issn 2079-6382
publishDate 2020-09-01
description <i>Acinetobacter</i> spp. has gained fame from their ability to resist difficult conditions and their constant development of antimicrobial resistance. This study aimed to investigate the prevalence, susceptibility testing, OXA carbapenemase-encoding genes, and RAPD-genotyping of multidrug resistant <i>Acinetobacter baumannii</i> incriminated in hidden community-acquired infections in Egypt. The antimicrobial susceptibility testing was assessed phenotypically using Kirby–Bauer disk diffusion method. Also, Modified-Hodge test (MHT) was carried out to detect the carbapenemases production. Multiplex-PCR was used to detect the carbapenemase-encoding genes. Furthermore, the genetic relationship among the isolated strains was investigated using RAPD fingerprinting. The bacteriological examination revealed that, out of 200 Gram-negative non-fermentative isolates, 44 (22%) were identified phenotypically and biochemically as <i>Acinetobacter</i> spp. and 23 (11.5%) were molecularly confirmed as <i>A.</i><i>baumannii</i>. The retrieved <i>A.</i><i>baumannii</i> strains were isolated from urine (69%), sputum (22%), and cerebrospinal fluid (csf) (9%). The isolated <i>A. baumannii</i> strains exhibited multidrug resistance and the production rates of carbapenemases were 56.5, 60.9, and 78.3% with meropenem, imipenem, and ertapenem disks, respectively. The <i>bla</i><sub>OXA-24</sub>-like genes were the most predominant among the tested strains (65.2%), followed by <i>bla</i><sub>OXA-23</sub> (30.4%) and <i>bla</i><sub>OXA-58</sub> (17.4%), in addition, the examined strains are harbored IMP, VIM, and NDM genes with prevalence of 60.9, 43.5, and 13%, respectively, while KPC and GES genes were not detected. RAPD-PCR revealed that the examined strains are clustered into 11 different genotypes at ≥90% similarity. Briefly, to the best of our knowledge, this study is the first report concerning community-associated <i>A. baumannii</i> infections in Egypt. The high prevalence of hidden multidrug-resistant (MDR) and extensively drug-resistant (XDR) <i>A.</i><i>baumannii</i> strains associated with non-hospitalized patients raises an alarm for healthcare authorities to set strict standards to control the spread of such pathogens with high rates of morbidity and mortality.
topic <i>Acinetobacter baumannii</i>
antibiogram
MDR
carbapenemase encoding genes
RAPD-genotyping
url https://www.mdpi.com/2079-6382/9/9/603
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