Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster

• Main Authors: Evan Long, Carrie Evans, John Chaston, Joshua A. Udall
• Format: Article
• Language: English
• Published: Oxford University Press 2018-10-01
• Series: G3: Genes, Genomes, Genetics
• Subjects: Structural Variation (SV); Long-read sequencing; Optical mapping
• Online Access: http://g3journal.org/lookup/doi/10.1534/g3.118.200631

Chromosomal structural variations (SV) including insertions, deletions, inversions, and translocations occur within the genome and can have a significant effect on organismal phenotype. Some of these effects are caused by structural variations containing genes. Large structural variations represent a significant amount of the genetic diversity within a population. We used a global sampling of Drosophila melanogaster (Ithaca, Zimbabwe, Beijing, Tasmania, and Netherlands) to represent diverse populations within the species. We used long-read sequencing and optical mapping technologies to identify SVs in these genomes. Among the five lines examined, we found an average of 2,928 structural variants within these genomes. These structural variations varied greatly in size and location, included many exonic regions, and could impact adaptation and genomic evolution.