Mass Transport and Turbulent Statistics within Two Branching Coral Colonies

Large eddy simulations were performed to characterize the flow and mass transport mechanisms in the interior of two <i>Pocillopora</i> coral colonies with different geometries, one with a relatively loosely branched morphology (<i>P. eydouxi</i>), and the other with a relativ...

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Main Authors: Md Monir Hossain, Anne E. Staples
Format: Article
Language:English
Published: MDPI AG 2020-09-01
Series:Fluids
Subjects:
Online Access:https://www.mdpi.com/2311-5521/5/3/153
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spelling doaj-2604582f223a42ad81dcd54015da1ad02020-11-25T02:44:17ZengMDPI AGFluids2311-55212020-09-01515315310.3390/fluids5030153Mass Transport and Turbulent Statistics within Two Branching Coral ColoniesMd Monir Hossain0Anne E. Staples1Engineering Mechanics Program, Department of Biomedical Engineering & Mechanics, Virginia Tech, Blacksburg, VA 24061, USAEngineering Mechanics Program, Department of Biomedical Engineering & Mechanics, Virginia Tech, Blacksburg, VA 24061, USALarge eddy simulations were performed to characterize the flow and mass transport mechanisms in the interior of two <i>Pocillopora</i> coral colonies with different geometries, one with a relatively loosely branched morphology (<i>P. eydouxi</i>), and the other with a relatively densely branched structure (<i>P. meandrina</i>). Detailed velocity vector and streamline fields were obtained inside both corals for the same unidirectional oncoming flow, and significant differences were found between their flow profiles and mass transport mechanisms. For the densely branched <i>P. meandrina</i> colony, a significant number of vortices were shed from individual branches, which passively stirred the water column and enhanced the mass transport rate inside the colony. In contrast, vortices were mostly absent within the more loosely branched <i>P. eydouxi</i> colony. To further understand the impact of the branch density on internal mass transport processes, the non-dimensional Stanton number for mass transfer, St, was calculated based on the local flow time scale and compared between the colonies. The results showed up to a <inline-formula><math display="inline"><semantics><mrow><mn>219</mn><mo>%</mo></mrow></semantics></math></inline-formula> increase in St when the mean vortex diameter was used to calculate St, compared to calculations based on the mean branch diameter. Turbulent flow statistics, including the fluctuating velocity components, the mean Reynolds stress, and the variance of the velocity components were calculated and compared along the height of the flow domain. The comparison of turbulent flow statistics showed similar Reynolds stress profiles for both corals, but higher velocity variations, in the interior of the densely branched coral, <i>P. meandrina</i>.https://www.mdpi.com/2311-5521/5/3/153coral hydrodynamicsimmersed boundary methodlarge eddy simulationturbulent stressesmass transfer
collection DOAJ
language English
format Article
sources DOAJ
author Md Monir Hossain
Anne E. Staples
spellingShingle Md Monir Hossain
Anne E. Staples
Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
Fluids
coral hydrodynamics
immersed boundary method
large eddy simulation
turbulent stresses
mass transfer
author_facet Md Monir Hossain
Anne E. Staples
author_sort Md Monir Hossain
title Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
title_short Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
title_full Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
title_fullStr Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
title_full_unstemmed Mass Transport and Turbulent Statistics within Two Branching Coral Colonies
title_sort mass transport and turbulent statistics within two branching coral colonies
publisher MDPI AG
series Fluids
issn 2311-5521
publishDate 2020-09-01
description Large eddy simulations were performed to characterize the flow and mass transport mechanisms in the interior of two <i>Pocillopora</i> coral colonies with different geometries, one with a relatively loosely branched morphology (<i>P. eydouxi</i>), and the other with a relatively densely branched structure (<i>P. meandrina</i>). Detailed velocity vector and streamline fields were obtained inside both corals for the same unidirectional oncoming flow, and significant differences were found between their flow profiles and mass transport mechanisms. For the densely branched <i>P. meandrina</i> colony, a significant number of vortices were shed from individual branches, which passively stirred the water column and enhanced the mass transport rate inside the colony. In contrast, vortices were mostly absent within the more loosely branched <i>P. eydouxi</i> colony. To further understand the impact of the branch density on internal mass transport processes, the non-dimensional Stanton number for mass transfer, St, was calculated based on the local flow time scale and compared between the colonies. The results showed up to a <inline-formula><math display="inline"><semantics><mrow><mn>219</mn><mo>%</mo></mrow></semantics></math></inline-formula> increase in St when the mean vortex diameter was used to calculate St, compared to calculations based on the mean branch diameter. Turbulent flow statistics, including the fluctuating velocity components, the mean Reynolds stress, and the variance of the velocity components were calculated and compared along the height of the flow domain. The comparison of turbulent flow statistics showed similar Reynolds stress profiles for both corals, but higher velocity variations, in the interior of the densely branched coral, <i>P. meandrina</i>.
topic coral hydrodynamics
immersed boundary method
large eddy simulation
turbulent stresses
mass transfer
url https://www.mdpi.com/2311-5521/5/3/153
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