Reliability of transcriptional cycles and the yeast cell-cycle oscillator.

A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely...

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Main Authors: Volkan Sevim, Xinwei Gong, Joshua E S Socolar
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2010-07-01
Series:PLoS Computational Biology
Online Access:http://europepmc.org/articles/PMC2900291?pdf=render
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spelling doaj-28291531374a4ff1a36a583d9144131c2020-11-25T01:46:01ZengPublic Library of Science (PLoS)PLoS Computational Biology1553-734X1553-73582010-07-0167e100084210.1371/journal.pcbi.1000842Reliability of transcriptional cycles and the yeast cell-cycle oscillator.Volkan SevimXinwei GongJoshua E S SocolarA recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely on a constitutive signal or positive auto-regulation, but rather to operate through stable transmission of a pulse on a slow positive feedback loop that determines its period. We construct a continuous-time Boolean model of this network, which permits the modeling of noise through small fluctuations in the timing of events, and show that it can sustain stable oscillations. Analysis of simpler network models shows how a few building blocks can be arranged to provide stability against fluctuations. Our findings suggest that the transcriptional oscillator in yeast belongs to a new class of biological oscillators.http://europepmc.org/articles/PMC2900291?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Volkan Sevim
Xinwei Gong
Joshua E S Socolar
spellingShingle Volkan Sevim
Xinwei Gong
Joshua E S Socolar
Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
PLoS Computational Biology
author_facet Volkan Sevim
Xinwei Gong
Joshua E S Socolar
author_sort Volkan Sevim
title Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
title_short Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
title_full Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
title_fullStr Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
title_full_unstemmed Reliability of transcriptional cycles and the yeast cell-cycle oscillator.
title_sort reliability of transcriptional cycles and the yeast cell-cycle oscillator.
publisher Public Library of Science (PLoS)
series PLoS Computational Biology
issn 1553-734X
1553-7358
publishDate 2010-07-01
description A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely on a constitutive signal or positive auto-regulation, but rather to operate through stable transmission of a pulse on a slow positive feedback loop that determines its period. We construct a continuous-time Boolean model of this network, which permits the modeling of noise through small fluctuations in the timing of events, and show that it can sustain stable oscillations. Analysis of simpler network models shows how a few building blocks can be arranged to provide stability against fluctuations. Our findings suggest that the transcriptional oscillator in yeast belongs to a new class of biological oscillators.
url http://europepmc.org/articles/PMC2900291?pdf=render
work_keys_str_mv AT volkansevim reliabilityoftranscriptionalcyclesandtheyeastcellcycleoscillator
AT xinweigong reliabilityoftranscriptionalcyclesandtheyeastcellcycleoscillator
AT joshuaessocolar reliabilityoftranscriptionalcyclesandtheyeastcellcycleoscillator
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