Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences
Promoters are fundamental components of synthetic gene circuits. They are DNA segments where transcription initiation takes place. New constitutive and regulated promoters are constantly engineered in order to meet the requirements for protein and RNA expression into different genetic networks. In t...
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doaj-29f8ac192dd741229f5be2e81ed8ee852021-06-01T01:16:57ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672021-05-01225704570410.3390/ijms22115704Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter SequencesXiaofan Feng0Mario Andrea Marchisio1School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, Tianjin 300072, ChinaSchool of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, Tianjin 300072, ChinaPromoters are fundamental components of synthetic gene circuits. They are DNA segments where transcription initiation takes place. New constitutive and regulated promoters are constantly engineered in order to meet the requirements for protein and RNA expression into different genetic networks. In this work, we constructed and optimized new synthetic constitutive promoters for the yeast <i>Saccharomyces cerevisiae</i>. We started from foreign (e.g., viral) core promoters as templates. They are, usually, unfunctional in yeast but can be activated by extending them with a short sequence, from the <i>CYC1</i> promoter, containing various transcription start sites (TSSs). Transcription was modulated by mutating the TATA box composition and varying its distance from the TSS. We found that gene expression is maximized when the TATA box has the form TATAAAA or TATATAA and lies between 30 and 70 nucleotides upstream of the TSS. Core promoters were turned into stronger promoters via the addition of a short UAS. In particular, the 40 nt bipartite UAS from the <i>GPD</i> promoter can enhance protein synthesis considerably when placed 150 nt upstream of the TATA box. Overall, we extended the pool of <i>S. cerevisiae</i> promoters with 59 new samples, the strongest overcoming the native <i>TEF2</i> promoter.https://www.mdpi.com/1422-0067/22/11/5704synthetic biologypromotersTATA boxUASgene expression<i>Saccharomyces cerevisiae</i> |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Xiaofan Feng Mario Andrea Marchisio |
spellingShingle |
Xiaofan Feng Mario Andrea Marchisio Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences International Journal of Molecular Sciences synthetic biology promoters TATA box UAS gene expression <i>Saccharomyces cerevisiae</i> |
author_facet |
Xiaofan Feng Mario Andrea Marchisio |
author_sort |
Xiaofan Feng |
title |
Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences |
title_short |
Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences |
title_full |
Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences |
title_fullStr |
Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences |
title_full_unstemmed |
Novel <i>S. cerevisiae</i> Hybrid Synthetic Promoters Based on Foreign Core Promoter Sequences |
title_sort |
novel <i>s. cerevisiae</i> hybrid synthetic promoters based on foreign core promoter sequences |
publisher |
MDPI AG |
series |
International Journal of Molecular Sciences |
issn |
1661-6596 1422-0067 |
publishDate |
2021-05-01 |
description |
Promoters are fundamental components of synthetic gene circuits. They are DNA segments where transcription initiation takes place. New constitutive and regulated promoters are constantly engineered in order to meet the requirements for protein and RNA expression into different genetic networks. In this work, we constructed and optimized new synthetic constitutive promoters for the yeast <i>Saccharomyces cerevisiae</i>. We started from foreign (e.g., viral) core promoters as templates. They are, usually, unfunctional in yeast but can be activated by extending them with a short sequence, from the <i>CYC1</i> promoter, containing various transcription start sites (TSSs). Transcription was modulated by mutating the TATA box composition and varying its distance from the TSS. We found that gene expression is maximized when the TATA box has the form TATAAAA or TATATAA and lies between 30 and 70 nucleotides upstream of the TSS. Core promoters were turned into stronger promoters via the addition of a short UAS. In particular, the 40 nt bipartite UAS from the <i>GPD</i> promoter can enhance protein synthesis considerably when placed 150 nt upstream of the TATA box. Overall, we extended the pool of <i>S. cerevisiae</i> promoters with 59 new samples, the strongest overcoming the native <i>TEF2</i> promoter. |
topic |
synthetic biology promoters TATA box UAS gene expression <i>Saccharomyces cerevisiae</i> |
url |
https://www.mdpi.com/1422-0067/22/11/5704 |
work_keys_str_mv |
AT xiaofanfeng noveliscerevisiaeihybridsyntheticpromotersbasedonforeigncorepromotersequences AT marioandreamarchisio noveliscerevisiaeihybridsyntheticpromotersbasedonforeigncorepromotersequences |
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1721412629820342272 |