Structural Basis for the C-Terminal Domain of <i>Mycobacterium Tuberculosis</i> Ribosome Maturation Factor RimM to Bind Ribosomal Protein S19

• Main Authors: Haoran Zhang, Qiuxiang Zhou, Chenyun Guo, Liubin Feng, Huilin Wang, Xinli Liao, Donghai Lin
• Format: Article
• Language: English
• Published: MDPI AG 2021-04-01
• Series: Biomolecules
• Subjects: protein structure; Mycobacterium tuberculosis; ribosome maturation factor RimM; NMR spectroscopy; protein dynamics; MD simulation
• Online Access: https://www.mdpi.com/2218-273X/11/4/597

Multidrug-resistant tuberculosis (TB) is a serious threat to public health, calling for the development of new anti-TB drugs. Chaperon protein RimM, involved in the assembly of ribosomal protein S19 into 30S ribosomal subunit during ribosome maturation, is a potential drug target for TB treatment. The C-terminal domain (CTD) of RimM is primarily responsible for binding S19. However, both the CTD structure of RimM from Mycobacterium tuberculosis (MtbRimM_CTD) and the molecular mechanisms underlying MtbRimM_CTD binding S19 remain elusive. Here, we report the solution structure, dynamics features of MtbRimM_CTD, and its interaction with S19. MtbRimM_CTD has a rigid hydrophobic core comprised of a relatively conservative six-strand β-barrel, tailed with a short α-helix and interspersed with flexible loops. Using several biophysical techniques including surface plasmon resonance (SPR) affinity assays, nuclear magnetic resonance (NMR) assays, and molecular docking, we established a structural model of the MtbRimM_CTD–S19 complex and indicated that the β4-β5 loop and two nonconserved key residues (D105 and H129) significantly contributed to the unique pattern of MtbRimM_CTD binding S19, which might be implicated in a form of orthogonality for species-dependent RimM–S19 interaction. Our study provides the structural basis for MtbRimM_CTD binding S19 and is beneficial to the further exploration of MtbRimM as a potential target for the development of new anti-TB drugs.