Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.

<h4>Aims</h4>Statin-related myopathy (SRM), which includes rhabdomyolysis, is an uncommon but important adverse drug reaction because the number of people prescribed statins world-wide is large. Previous association studies of common genetic variants have had limited success in identifyi...

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Main Authors: James S Floyd, Katarzyna M Bloch, Jennifer A Brody, Cyrielle Maroteau, Moneeza K Siddiqui, Richard Gregory, Daniel F Carr, Mariam Molokhia, Xiaoming Liu, Joshua C Bis, Ammar Ahmed, Xuan Liu, Pär Hallberg, Qun-Ying Yue, Patrik K E Magnusson, Diane Brisson, Kerri L Wiggins, Alanna C Morrison, Etienne Khoury, Paul McKeigue, Bruno H Stricker, Maryse Lapeyre-Mestre, Susan R Heckbert, Arlene M Gallagher, Hector Chinoy, Richard A Gibbs, Emmanuelle Bondon-Guitton, Russell Tracy, Eric Boerwinkle, Daniel Gaudet, Anita Conforti, Tjeerd van Staa, Colleen M Sitlani, Kenneth M Rice, Anke-Hilse Maitland-van der Zee, Mia Wadelius, Andrew P Morris, Munir Pirmohamed, Colin A N Palmer, Bruce M Psaty, Ana Alfirevic, PREDICTION-ADR Consortium and EUDRAGENE
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2019-01-01
Series:PLoS ONE
Online Access:https://doi.org/10.1371/journal.pone.0218115
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spelling doaj-2ad0f040dcd841839a2fd08139da53902021-03-04T12:38:25ZengPublic Library of Science (PLoS)PLoS ONE1932-62032019-01-01146e021811510.1371/journal.pone.0218115Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.James S FloydKatarzyna M BlochJennifer A BrodyCyrielle MaroteauMoneeza K SiddiquiRichard GregoryDaniel F CarrMariam MolokhiaXiaoming LiuJoshua C BisAmmar AhmedXuan LiuPär HallbergQun-Ying YuePatrik K E MagnussonDiane BrissonKerri L WigginsAlanna C MorrisonEtienne KhouryPaul McKeigueBruno H StrickerMaryse Lapeyre-MestreSusan R HeckbertArlene M GallagherHector ChinoyRichard A GibbsEmmanuelle Bondon-GuittonRussell TracyEric BoerwinkleDaniel GaudetAnita ConfortiTjeerd van StaaColleen M SitlaniKenneth M RiceAnke-Hilse Maitland-van der ZeeMia WadeliusAndrew P MorrisMunir PirmohamedColin A N PalmerBruce M PsatyAna AlfirevicPREDICTION-ADR Consortium and EUDRAGENE<h4>Aims</h4>Statin-related myopathy (SRM), which includes rhabdomyolysis, is an uncommon but important adverse drug reaction because the number of people prescribed statins world-wide is large. Previous association studies of common genetic variants have had limited success in identifying a genetic basis for this adverse drug reaction. We conducted a multi-site whole-exome sequencing study to investigate whether rare coding variants confer an increased risk of SRM.<h4>Methods and results</h4>SRM 3-5 cases (N = 505) and statin treatment-tolerant controls (N = 2047) were recruited from multiple sites in North America and Europe. SRM 3-5 was defined as symptoms consistent with muscle injury and an elevated creatine phosphokinase level >4 times upper limit of normal without another likely cause of muscle injury. Whole-exome sequencing and variant calling was coordinated from two analysis centres, and results of single-variant and gene-based burden tests were meta-analysed. No genome-wide significant associations were identified. Given the large number of cases, we had 80% power to identify a variant with minor allele frequency of 0.01 that increases the risk of SRM 6-fold at genome-wide significance.<h4>Conclusions</h4>In this large whole-exome sequencing study of severe statin-related muscle injury conducted to date, we did not find evidence that rare coding variants are responsible for this adverse drug reaction. Larger sample sizes would be required to identify rare variants with small effects, but it is unclear whether such findings would be clinically actionable.https://doi.org/10.1371/journal.pone.0218115
collection DOAJ
language English
format Article
sources DOAJ
author James S Floyd
Katarzyna M Bloch
Jennifer A Brody
Cyrielle Maroteau
Moneeza K Siddiqui
Richard Gregory
Daniel F Carr
Mariam Molokhia
Xiaoming Liu
Joshua C Bis
Ammar Ahmed
Xuan Liu
Pär Hallberg
Qun-Ying Yue
Patrik K E Magnusson
Diane Brisson
Kerri L Wiggins
Alanna C Morrison
Etienne Khoury
Paul McKeigue
Bruno H Stricker
Maryse Lapeyre-Mestre
Susan R Heckbert
Arlene M Gallagher
Hector Chinoy
Richard A Gibbs
Emmanuelle Bondon-Guitton
Russell Tracy
Eric Boerwinkle
Daniel Gaudet
Anita Conforti
Tjeerd van Staa
Colleen M Sitlani
Kenneth M Rice
Anke-Hilse Maitland-van der Zee
Mia Wadelius
Andrew P Morris
Munir Pirmohamed
Colin A N Palmer
Bruce M Psaty
Ana Alfirevic
PREDICTION-ADR Consortium and EUDRAGENE
spellingShingle James S Floyd
Katarzyna M Bloch
Jennifer A Brody
Cyrielle Maroteau
Moneeza K Siddiqui
Richard Gregory
Daniel F Carr
Mariam Molokhia
Xiaoming Liu
Joshua C Bis
Ammar Ahmed
Xuan Liu
Pär Hallberg
Qun-Ying Yue
Patrik K E Magnusson
Diane Brisson
Kerri L Wiggins
Alanna C Morrison
Etienne Khoury
Paul McKeigue
Bruno H Stricker
Maryse Lapeyre-Mestre
Susan R Heckbert
Arlene M Gallagher
Hector Chinoy
Richard A Gibbs
Emmanuelle Bondon-Guitton
Russell Tracy
Eric Boerwinkle
Daniel Gaudet
Anita Conforti
Tjeerd van Staa
Colleen M Sitlani
Kenneth M Rice
Anke-Hilse Maitland-van der Zee
Mia Wadelius
Andrew P Morris
Munir Pirmohamed
Colin A N Palmer
Bruce M Psaty
Ana Alfirevic
PREDICTION-ADR Consortium and EUDRAGENE
Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
PLoS ONE
author_facet James S Floyd
Katarzyna M Bloch
Jennifer A Brody
Cyrielle Maroteau
Moneeza K Siddiqui
Richard Gregory
Daniel F Carr
Mariam Molokhia
Xiaoming Liu
Joshua C Bis
Ammar Ahmed
Xuan Liu
Pär Hallberg
Qun-Ying Yue
Patrik K E Magnusson
Diane Brisson
Kerri L Wiggins
Alanna C Morrison
Etienne Khoury
Paul McKeigue
Bruno H Stricker
Maryse Lapeyre-Mestre
Susan R Heckbert
Arlene M Gallagher
Hector Chinoy
Richard A Gibbs
Emmanuelle Bondon-Guitton
Russell Tracy
Eric Boerwinkle
Daniel Gaudet
Anita Conforti
Tjeerd van Staa
Colleen M Sitlani
Kenneth M Rice
Anke-Hilse Maitland-van der Zee
Mia Wadelius
Andrew P Morris
Munir Pirmohamed
Colin A N Palmer
Bruce M Psaty
Ana Alfirevic
PREDICTION-ADR Consortium and EUDRAGENE
author_sort James S Floyd
title Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
title_short Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
title_full Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
title_fullStr Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
title_full_unstemmed Pharmacogenomics of statin-related myopathy: Meta-analysis of rare variants from whole-exome sequencing.
title_sort pharmacogenomics of statin-related myopathy: meta-analysis of rare variants from whole-exome sequencing.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2019-01-01
description <h4>Aims</h4>Statin-related myopathy (SRM), which includes rhabdomyolysis, is an uncommon but important adverse drug reaction because the number of people prescribed statins world-wide is large. Previous association studies of common genetic variants have had limited success in identifying a genetic basis for this adverse drug reaction. We conducted a multi-site whole-exome sequencing study to investigate whether rare coding variants confer an increased risk of SRM.<h4>Methods and results</h4>SRM 3-5 cases (N = 505) and statin treatment-tolerant controls (N = 2047) were recruited from multiple sites in North America and Europe. SRM 3-5 was defined as symptoms consistent with muscle injury and an elevated creatine phosphokinase level >4 times upper limit of normal without another likely cause of muscle injury. Whole-exome sequencing and variant calling was coordinated from two analysis centres, and results of single-variant and gene-based burden tests were meta-analysed. No genome-wide significant associations were identified. Given the large number of cases, we had 80% power to identify a variant with minor allele frequency of 0.01 that increases the risk of SRM 6-fold at genome-wide significance.<h4>Conclusions</h4>In this large whole-exome sequencing study of severe statin-related muscle injury conducted to date, we did not find evidence that rare coding variants are responsible for this adverse drug reaction. Larger sample sizes would be required to identify rare variants with small effects, but it is unclear whether such findings would be clinically actionable.
url https://doi.org/10.1371/journal.pone.0218115
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