Emerging Technologies in Mass Spectrometry-Based DNA Adductomics

The measurement of DNA adducts, the covalent modifications of DNA upon the exposure to the environmental and dietary genotoxicants and endogenously produced electrophiles, provides molecular evidence for DNA damage. With the recent improvements in the sensitivity and scanning speed of mass spectrome...

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Main Authors: Jingshu Guo, Robert J. Turesky
Format: Article
Language:English
Published: MDPI AG 2019-05-01
Series:High-Throughput
Subjects:
Online Access:https://www.mdpi.com/2571-5135/8/2/13
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spelling doaj-2f63706ae42e4d8d9794307f304fc2752020-11-25T01:31:22ZengMDPI AGHigh-Throughput2571-51352019-05-01821310.3390/ht8020013ht8020013Emerging Technologies in Mass Spectrometry-Based DNA AdductomicsJingshu Guo0Robert J. Turesky1Masonic Cancer Center and Department of Medicinal Chemistry, University of Minnesota, 2231 6th St. SE, Minneapolis, MI 55455, USAMasonic Cancer Center and Department of Medicinal Chemistry, University of Minnesota, 2231 6th St. SE, Minneapolis, MI 55455, USAThe measurement of DNA adducts, the covalent modifications of DNA upon the exposure to the environmental and dietary genotoxicants and endogenously produced electrophiles, provides molecular evidence for DNA damage. With the recent improvements in the sensitivity and scanning speed of mass spectrometry (MS) instrumentation, particularly high-resolution MS, it is now feasible to screen for the totality of DNA damage in the human genome through DNA adductomics approaches. Several MS platforms have been used in DNA adductomic analysis, each of which has its strengths and limitations. The loss of 2′-deoxyribose from the modified nucleoside upon collision-induced dissociation is the main transition feature utilized in the screening of DNA adducts. Several advanced data-dependent and data-independent scanning techniques originated from proteomics and metabolomics have been tailored for DNA adductomics. The field of DNA adductomics is an emerging technology in human exposure assessment. As the analytical technology matures and bioinformatics tools become available for analysis of the MS data, DNA adductomics can advance our understanding about the role of chemical exposures in DNA damage and disease risk.https://www.mdpi.com/2571-5135/8/2/13CarcinogensDNA adductsadductomicsmass spectrometry
collection DOAJ
language English
format Article
sources DOAJ
author Jingshu Guo
Robert J. Turesky
spellingShingle Jingshu Guo
Robert J. Turesky
Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
High-Throughput
Carcinogens
DNA adducts
adductomics
mass spectrometry
author_facet Jingshu Guo
Robert J. Turesky
author_sort Jingshu Guo
title Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
title_short Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
title_full Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
title_fullStr Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
title_full_unstemmed Emerging Technologies in Mass Spectrometry-Based DNA Adductomics
title_sort emerging technologies in mass spectrometry-based dna adductomics
publisher MDPI AG
series High-Throughput
issn 2571-5135
publishDate 2019-05-01
description The measurement of DNA adducts, the covalent modifications of DNA upon the exposure to the environmental and dietary genotoxicants and endogenously produced electrophiles, provides molecular evidence for DNA damage. With the recent improvements in the sensitivity and scanning speed of mass spectrometry (MS) instrumentation, particularly high-resolution MS, it is now feasible to screen for the totality of DNA damage in the human genome through DNA adductomics approaches. Several MS platforms have been used in DNA adductomic analysis, each of which has its strengths and limitations. The loss of 2′-deoxyribose from the modified nucleoside upon collision-induced dissociation is the main transition feature utilized in the screening of DNA adducts. Several advanced data-dependent and data-independent scanning techniques originated from proteomics and metabolomics have been tailored for DNA adductomics. The field of DNA adductomics is an emerging technology in human exposure assessment. As the analytical technology matures and bioinformatics tools become available for analysis of the MS data, DNA adductomics can advance our understanding about the role of chemical exposures in DNA damage and disease risk.
topic Carcinogens
DNA adducts
adductomics
mass spectrometry
url https://www.mdpi.com/2571-5135/8/2/13
work_keys_str_mv AT jingshuguo emergingtechnologiesinmassspectrometrybaseddnaadductomics
AT robertjturesky emergingtechnologiesinmassspectrometrybaseddnaadductomics
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