A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX
Background: Osteogenesis imperfecta (OI) is a heterogeneous genetic disorder characterized by bone fragility. PPIB pathogenic variants cause a perinatal lethal form of OI type IX. A limited number of pathogenic variants have been reported so far worldwide.Methods: We identified a rare pedigree whose...
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Frontiers Media S.A.
2021-09-01
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Online Access: | https://www.frontiersin.org/articles/10.3389/fgene.2021.717294/full |
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Article |
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DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Wenting Zhu Wenting Zhu Kai Yan Xijing Chen Wei Zhao Wei Zhao Yiqing Wu Yiqing Wu Huanna Tang Huanna Tang Ming Chen Jian Wu Pengpeng Wang Runju Zhang Yiping Shen Yiping Shen Dan Zhang Dan Zhang |
spellingShingle |
Wenting Zhu Wenting Zhu Kai Yan Xijing Chen Wei Zhao Wei Zhao Yiqing Wu Yiqing Wu Huanna Tang Huanna Tang Ming Chen Jian Wu Pengpeng Wang Runju Zhang Yiping Shen Yiping Shen Dan Zhang Dan Zhang A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX Frontiers in Genetics osteogenesis imperfecta type IX PPIB gene founder mutation pathogenic variant Chinese |
author_facet |
Wenting Zhu Wenting Zhu Kai Yan Xijing Chen Wei Zhao Wei Zhao Yiqing Wu Yiqing Wu Huanna Tang Huanna Tang Ming Chen Jian Wu Pengpeng Wang Runju Zhang Yiping Shen Yiping Shen Dan Zhang Dan Zhang |
author_sort |
Wenting Zhu |
title |
A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX |
title_short |
A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX |
title_full |
A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX |
title_fullStr |
A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX |
title_full_unstemmed |
A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX |
title_sort |
founder pathogenic variant of ppib unique to chinese population causes osteogenesis imperfecta ix |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Genetics |
issn |
1664-8021 |
publishDate |
2021-09-01 |
description |
Background: Osteogenesis imperfecta (OI) is a heterogeneous genetic disorder characterized by bone fragility. PPIB pathogenic variants cause a perinatal lethal form of OI type IX. A limited number of pathogenic variants have been reported so far worldwide.Methods: We identified a rare pedigree whose phenotype was highly consistent with OI-IX. Exome sequencing was performed to uncover the causal variants. The variant pathogenicity was classified following the ACMG/AMP guidelines. The founder effect and the age of the variant were assessed.Results: We identified a homozygous missense variant c.509G > A/p.G170D in PPIB in an affected fetus. This variant is a Chinese-specific allele and can now be classified as pathogenic. We estimated the allele frequency (AF) of this variant to be 0.0000427 in a Chinese cohort involving 128,781 individuals. All patients and carriers shared a common haplotype, indicative of a founder effect. The estimated age of variant was 65,160 years. We further identified pathogenic variants of PPIB in gnomAD and ClinVar databases, the conserved estimation of OI type IX incidence to be 1/1,000,000 in Chinese population.Conclusion: We reported a founder pathogenic variant in PPIB specific to the Chinese population. We further provided our initial estimation of OI-IX disease incidence in China. |
topic |
osteogenesis imperfecta type IX PPIB gene founder mutation pathogenic variant Chinese |
url |
https://www.frontiersin.org/articles/10.3389/fgene.2021.717294/full |
work_keys_str_mv |
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doaj-3358fdbecaa74ee19c1db8f3e56ce4552021-09-29T05:42:12ZengFrontiers Media S.A.Frontiers in Genetics1664-80212021-09-011210.3389/fgene.2021.717294717294A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IXWenting Zhu0Wenting Zhu1Kai Yan2Xijing Chen3Wei Zhao4Wei Zhao5Yiqing Wu6Yiqing Wu7Huanna Tang8Huanna Tang9Ming Chen10Jian Wu11Pengpeng Wang12Runju Zhang13Yiping Shen14Yiping Shen15Dan Zhang16Dan Zhang17Women’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Genetics and Reproduction, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaWomen’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaWomen’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaWomen’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDepartment of Genomic Medicine and Center for Medical Genetics, Changhua Christian Hospital, Changhua, TaiwanMyGenostics Inc., Beijing, ChinaMyGenostics Inc., Beijing, ChinaDepartment of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaWomen’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaDivision of Genetics and Genomics, Department of Neurology, Boston Children’s Hospital and Harvard Medical School, Boston, MA, United StatesWomen’s Reproductive Health Research Key Laboratory of Zhejiang Province and Department of Reproductive Endocrinology, Women’s Hospital, Zhejiang University School of Medicine, Hangzhou, ChinaKey Laboratory of Reproductive Genetics, Zhejiang University, Ministry of Education, Hangzhou, ChinaBackground: Osteogenesis imperfecta (OI) is a heterogeneous genetic disorder characterized by bone fragility. PPIB pathogenic variants cause a perinatal lethal form of OI type IX. A limited number of pathogenic variants have been reported so far worldwide.Methods: We identified a rare pedigree whose phenotype was highly consistent with OI-IX. Exome sequencing was performed to uncover the causal variants. The variant pathogenicity was classified following the ACMG/AMP guidelines. The founder effect and the age of the variant were assessed.Results: We identified a homozygous missense variant c.509G > A/p.G170D in PPIB in an affected fetus. This variant is a Chinese-specific allele and can now be classified as pathogenic. We estimated the allele frequency (AF) of this variant to be 0.0000427 in a Chinese cohort involving 128,781 individuals. All patients and carriers shared a common haplotype, indicative of a founder effect. The estimated age of variant was 65,160 years. We further identified pathogenic variants of PPIB in gnomAD and ClinVar databases, the conserved estimation of OI type IX incidence to be 1/1,000,000 in Chinese population.Conclusion: We reported a founder pathogenic variant in PPIB specific to the Chinese population. We further provided our initial estimation of OI-IX disease incidence in China.https://www.frontiersin.org/articles/10.3389/fgene.2021.717294/fullosteogenesis imperfecta type IXPPIB genefounder mutationpathogenic variantChinese |