Genomic position mapping discrepancies of commercial SNP chips.

The field of genetics has come to rely heavily on commercial genotyping arrays and accompanying annotations for insights into genotype-phenotype associations. However, in order to avoid errors and false leads, it is imperative that the annotation of SNP chromosomal positions is accurate and unambigu...

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Main Authors:	João Fadista, Christian Bendixen
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2012-01-01
Series:	PLoS ONE
Online Access:	http://europepmc.org/articles/PMC3281913?pdf=render

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spelling	doaj-33831fb381844b9f9cb5d616aa5f87e82020-11-25T02:04:02ZengPublic Library of Science (PLoS)PLoS ONE1932-62032012-01-0172e3102510.1371/journal.pone.0031025Genomic position mapping discrepancies of commercial SNP chips.João FadistaJoão FadistaChristian BendixenThe field of genetics has come to rely heavily on commercial genotyping arrays and accompanying annotations for insights into genotype-phenotype associations. However, in order to avoid errors and false leads, it is imperative that the annotation of SNP chromosomal positions is accurate and unambiguous. We report on genomic positional discrepancies of various SNP chips for human, cattle and mouse species, and discuss their causes and consequences.http://europepmc.org/articles/PMC3281913?pdf=render
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	João Fadista João Fadista Christian Bendixen
spellingShingle	João Fadista João Fadista Christian Bendixen Genomic position mapping discrepancies of commercial SNP chips. PLoS ONE
author_facet	João Fadista João Fadista Christian Bendixen
author_sort	João Fadista
title	Genomic position mapping discrepancies of commercial SNP chips.
title_short	Genomic position mapping discrepancies of commercial SNP chips.
title_full	Genomic position mapping discrepancies of commercial SNP chips.
title_fullStr	Genomic position mapping discrepancies of commercial SNP chips.
title_full_unstemmed	Genomic position mapping discrepancies of commercial SNP chips.
title_sort	genomic position mapping discrepancies of commercial snp chips.
publisher	Public Library of Science (PLoS)
series	PLoS ONE
issn	1932-6203
publishDate	2012-01-01
description	The field of genetics has come to rely heavily on commercial genotyping arrays and accompanying annotations for insights into genotype-phenotype associations. However, in order to avoid errors and false leads, it is imperative that the annotation of SNP chromosomal positions is accurate and unambiguous. We report on genomic positional discrepancies of various SNP chips for human, cattle and mouse species, and discuss their causes and consequences.
url	http://europepmc.org/articles/PMC3281913?pdf=render
work_keys_str_mv	AT joaofadista genomicpositionmappingdiscrepanciesofcommercialsnpchips AT joaofadista genomicpositionmappingdiscrepanciesofcommercialsnpchips AT christianbendixen genomicpositionmappingdiscrepanciesofcommercialsnpchips
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Genomic position mapping discrepancies of commercial SNP chips.

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