A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica

Floristic surveys are crucial to the conservation of biodiversity, but the vast majority of such surveys are limited to listing species names, and few take into account the evolutionary history of species. Here, we combine classical taxonomic and molecular phylogenetic (DNA barcoding) approaches to...

Full description

Bibliographic Details
Main Authors: Joel H. Nitta, Atsushi Ebihara, Alan R. Smith, Paulo Takeo Sano
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2020-01-01
Series:PLoS ONE
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7673574/?tool=EBI
id doaj-45e729107eb44dfa8c997afbb8a9e448
record_format Article
spelling doaj-45e729107eb44dfa8c997afbb8a9e4482020-11-25T04:09:12ZengPublic Library of Science (PLoS)PLoS ONE1932-62032020-01-011511A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa RicaJoel H. NittaAtsushi EbiharaAlan R. SmithPaulo Takeo SanoFloristic surveys are crucial to the conservation of biodiversity, but the vast majority of such surveys are limited to listing species names, and few take into account the evolutionary history of species. Here, we combine classical taxonomic and molecular phylogenetic (DNA barcoding) approaches to catalog the biodiversity of pteridophytes (ferns and lycophytes) of the Nectandra Cloud Forest Reserve, Costa Rica. Surveys were carried out over three field seasons (2008, 2011, and 2013), resulting in 176 species representing 69 genera and 22 families of pteridophytes. Our literature survey of protected areas in Costa Rica shows that Nectandra has an exceptionally diverse pteridophyte flora for its size. Plastid rbcL was selected as a DNA barcode marker and obtained for >95% of pteridophyte taxa at this site. Combined molecular and morphological analyses revealed two previously undescribed taxa that appear to be of hybrid origin. The utility of rbcL for species identification was assessed by calculating minimum interspecific distances and found to have a failure rate of 18%. Finally we compared the distribution of minimum interspecific rbcL distances with two other areas that have been the focus of pteridophyte molecular surveys: Japan and Tahiti. The comparison shows that Nectandra is more similar to Japan than Tahiti, which may reflect the biogeographic history of these floras.https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7673574/?tool=EBI
collection DOAJ
language English
format Article
sources DOAJ
author Joel H. Nitta
Atsushi Ebihara
Alan R. Smith
Paulo Takeo Sano
spellingShingle Joel H. Nitta
Atsushi Ebihara
Alan R. Smith
Paulo Takeo Sano
A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
PLoS ONE
author_facet Joel H. Nitta
Atsushi Ebihara
Alan R. Smith
Paulo Takeo Sano
author_sort Joel H. Nitta
title A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
title_short A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
title_full A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
title_fullStr A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
title_full_unstemmed A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica
title_sort taxonomic and molecular survey of the pteridophytes of the nectandra cloud forest reserve, costa rica
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2020-01-01
description Floristic surveys are crucial to the conservation of biodiversity, but the vast majority of such surveys are limited to listing species names, and few take into account the evolutionary history of species. Here, we combine classical taxonomic and molecular phylogenetic (DNA barcoding) approaches to catalog the biodiversity of pteridophytes (ferns and lycophytes) of the Nectandra Cloud Forest Reserve, Costa Rica. Surveys were carried out over three field seasons (2008, 2011, and 2013), resulting in 176 species representing 69 genera and 22 families of pteridophytes. Our literature survey of protected areas in Costa Rica shows that Nectandra has an exceptionally diverse pteridophyte flora for its size. Plastid rbcL was selected as a DNA barcode marker and obtained for >95% of pteridophyte taxa at this site. Combined molecular and morphological analyses revealed two previously undescribed taxa that appear to be of hybrid origin. The utility of rbcL for species identification was assessed by calculating minimum interspecific distances and found to have a failure rate of 18%. Finally we compared the distribution of minimum interspecific rbcL distances with two other areas that have been the focus of pteridophyte molecular surveys: Japan and Tahiti. The comparison shows that Nectandra is more similar to Japan than Tahiti, which may reflect the biogeographic history of these floras.
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7673574/?tool=EBI
work_keys_str_mv AT joelhnitta ataxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT atsushiebihara ataxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT alanrsmith ataxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT paulotakeosano ataxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT joelhnitta taxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT atsushiebihara taxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT alanrsmith taxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
AT paulotakeosano taxonomicandmolecularsurveyofthepteridophytesofthenectandracloudforestreservecostarica
_version_ 1724422818637021184