ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data

ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data

Whole-genome sequencing (WGS) of bacterial pathogens is currently widely used to support public-health investigations. The ability to assess WGS data quality is critical to underpin the reliability of downstream analyses. Sequence contamination is a quality issue that could potentially impact WGS-ba...

Full description

Bibliographic Details
Main Authors: Andrew J. Low, Adam G. Koziol, Paul A. Manninger, Burton Blais, Catherine D. Carrillo
Format: Article
Language:English
Published: PeerJ Inc. 2019-05-01
Series:PeerJ
Subjects:
Whole Genome Sequence
Contamination
Bacteria
Quality
Bioinformatic
ConFindr
Online Access:https://peerj.com/articles/6995.pdf

Similar Items

Similar Items