A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary

Ovary development is a complex process involving numerous genes. A well-developed ovary is essential for females to keep fertility and reproduce offspring. In order to gain a better insight into the molecular mechanisms related to the process of mammalian ovary development, we performed a comparativ...

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Main Authors: Linlin Pan, Wei Gong, Yuanyuan Zhou, Xiaonuan Li, Jun Yu, Songnian Hu
Format: Article
Language:English
Published: Elsevier 2014-10-01
Series:Genomics, Proteomics & Bioinformatics
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S167202291400103X
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spelling doaj-4ed7eedcbfd0451b806680cd32803c932020-11-24T22:54:23ZengElsevierGenomics, Proteomics & Bioinformatics1672-02292014-10-0112523924810.1016/j.gpb.2014.08.002A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse OvaryLinlin Pan0Wei Gong1Yuanyuan Zhou2Xiaonuan Li3Jun Yu4Songnian Hu5James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou 310058, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaJames D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou 310058, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaCAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, ChinaOvary development is a complex process involving numerous genes. A well-developed ovary is essential for females to keep fertility and reproduce offspring. In order to gain a better insight into the molecular mechanisms related to the process of mammalian ovary development, we performed a comparative transcriptomic analysis on ovaries isolated from infant and adult mice by using next-generation sequencing technology (SOLiD). We identified 15,454 and 16,646 transcriptionally active genes at the infant and adult stage, respectively. Among these genes, we also identified 7021 differentially expressed genes. Our analysis suggests that, in general, the adult ovary has a higher level of transcriptomic activity. However, it appears that genes related to primordial follicle development, such as those encoding Figla and Nobox, are more active in the infant ovary, whereas expression of genes vital for follicle development, such as Gdf9, Bmp4 and Bmp15, is upregulated in the adult. These data suggest a dynamic shift in gene expression during ovary development and it is apparent that these changes function to facilitate follicle maturation, when additional functional gene studies are considered. Furthermore, our investigation has also revealed several important functional pathways, such as apoptosis, MAPK and steroid biosynthesis, that appear to be much more active in the adult ovary compared to those of the infant. These findings will provide a solid foundation for future studies on ovary development in mice and other mammals and help to expand our understanding of the complex molecular and cellular events that occur during postnatal ovary development.http://www.sciencedirect.com/science/article/pii/S167202291400103XFolliculogenesisPostnatal ovary developmentTranscriptomeRNA-seq
collection DOAJ
language English
format Article
sources DOAJ
author Linlin Pan
Wei Gong
Yuanyuan Zhou
Xiaonuan Li
Jun Yu
Songnian Hu
spellingShingle Linlin Pan
Wei Gong
Yuanyuan Zhou
Xiaonuan Li
Jun Yu
Songnian Hu
A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
Genomics, Proteomics & Bioinformatics
Folliculogenesis
Postnatal ovary development
Transcriptome
RNA-seq
author_facet Linlin Pan
Wei Gong
Yuanyuan Zhou
Xiaonuan Li
Jun Yu
Songnian Hu
author_sort Linlin Pan
title A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
title_short A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
title_full A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
title_fullStr A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
title_full_unstemmed A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary
title_sort comprehensive transcriptomic analysis of infant and adult mouse ovary
publisher Elsevier
series Genomics, Proteomics & Bioinformatics
issn 1672-0229
publishDate 2014-10-01
description Ovary development is a complex process involving numerous genes. A well-developed ovary is essential for females to keep fertility and reproduce offspring. In order to gain a better insight into the molecular mechanisms related to the process of mammalian ovary development, we performed a comparative transcriptomic analysis on ovaries isolated from infant and adult mice by using next-generation sequencing technology (SOLiD). We identified 15,454 and 16,646 transcriptionally active genes at the infant and adult stage, respectively. Among these genes, we also identified 7021 differentially expressed genes. Our analysis suggests that, in general, the adult ovary has a higher level of transcriptomic activity. However, it appears that genes related to primordial follicle development, such as those encoding Figla and Nobox, are more active in the infant ovary, whereas expression of genes vital for follicle development, such as Gdf9, Bmp4 and Bmp15, is upregulated in the adult. These data suggest a dynamic shift in gene expression during ovary development and it is apparent that these changes function to facilitate follicle maturation, when additional functional gene studies are considered. Furthermore, our investigation has also revealed several important functional pathways, such as apoptosis, MAPK and steroid biosynthesis, that appear to be much more active in the adult ovary compared to those of the infant. These findings will provide a solid foundation for future studies on ovary development in mice and other mammals and help to expand our understanding of the complex molecular and cellular events that occur during postnatal ovary development.
topic Folliculogenesis
Postnatal ovary development
Transcriptome
RNA-seq
url http://www.sciencedirect.com/science/article/pii/S167202291400103X
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