A high-throughput SNP discovery strategy for RNA-seq data

A high-throughput SNP discovery strategy for RNA-seq data

Abstract Background Single nucleotide polymorphisms (SNP) have been applied as important molecular markers in genetics and breeding studies. The rapid advance of next generation sequencing (NGS) provides a high-throughput means of SNP discovery. However, SNP development is limited by the availabilit...

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Bibliographic Details
Main Authors: Yun Zhao, Ke Wang, Wen-li Wang, Ting-ting Yin, Wei-qi Dong, Chang-jie Xu
Format: Article
Language:English
Published: BMC 2019-02-01
Series:BMC Genomics
Subjects:
Single nucleotide polymorphism (SNP)
RNA-seq
Paired-end read length
Trinity
GATK
Online Access:http://link.springer.com/article/10.1186/s12864-019-5533-4

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