Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali
A moderately halophilic and strictly aerobic bacterium was isolated from a human stool as part of a study on the diagnosis of childhood malnutrition in Mali. Strain Marseille-Q1616T is a Gram-stain-positive, rod-shaped, catalase-positive and oxidase-negative bacterium. It has a genome size of 3.91 M...
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2021-07-01
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doaj-54b57c0dabe64dd493734d58af2281ba2021-07-31T04:38:55ZengElsevierNew Microbes and New Infections2052-29752021-07-0142100890Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in MaliS. Konate0A. Camara1C.I. Lo2M. Tidjani Alou3A. Hamidou Togo4S. Niare5N. Armstrong6A. Djimdé7M.A. Thera8F. Fenollar9D. Raoult10M. Million11Aix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, France; Université des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliAix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, France; Université des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliIHU-Méditerranée Infection, Marseille, France; Aix Marseille Université, IRD, AP-HM, SSA, VITROME, Marseille, FranceAix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, FranceUniversité des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliUniversité des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliAix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, FranceUniversité des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliUniversité des Sciences, des Techniques et des Technologies de Bamako, Bamako, MaliIHU-Méditerranée Infection, Marseille, France; Aix Marseille Université, IRD, AP-HM, SSA, VITROME, Marseille, FranceAix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, FranceAix Marseille Université, IRD, AP-HM, MEPHI, Marseille, France; IHU-Méditerranée Infection, Marseille, France; Corresponding author: M. Million, Institut Hospitalo-Universitaire Méditerranée-Infection, 19–21 Boulevard Jean Moulin, 13385, Marseille cedex 05, France.A moderately halophilic and strictly aerobic bacterium was isolated from a human stool as part of a study on the diagnosis of childhood malnutrition in Mali. Strain Marseille-Q1616T is a Gram-stain-positive, rod-shaped, catalase-positive and oxidase-negative bacterium. It has a genome size of 3.91 Mbp with 39.79% G+C content, which contains 3954 protein-coding genes including genes encoding phosphomycin resistance and Listeria monocytogenes, 16 rRNA genes and 64 tRNA genes. Strain Marseille-Q1616T exhibited a 96.3% 16S rRNA gene sequence similarity and shared an OrthoANI value of 70.64% (the highest observed) with Virgibacillus kekensis, the phylogenetically closest validly published species. Based on phenotypic and phylogenetic evidence and genomic average nucleotide identity values, we suggest the creation of a new species within the Virgibacillus genus, named Virgibacillus doumboii sp. nov., type strain Marseille-Q1616T (= CSURQ1616).http://www.sciencedirect.com/science/article/pii/S2052297521000548Child malnutritionculturomicsMalitaxonogenomicsVirgibacillus doumboii sp. nov. |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
S. Konate A. Camara C.I. Lo M. Tidjani Alou A. Hamidou Togo S. Niare N. Armstrong A. Djimdé M.A. Thera F. Fenollar D. Raoult M. Million |
spellingShingle |
S. Konate A. Camara C.I. Lo M. Tidjani Alou A. Hamidou Togo S. Niare N. Armstrong A. Djimdé M.A. Thera F. Fenollar D. Raoult M. Million Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali New Microbes and New Infections Child malnutrition culturomics Mali taxonogenomics Virgibacillus doumboii sp. nov. |
author_facet |
S. Konate A. Camara C.I. Lo M. Tidjani Alou A. Hamidou Togo S. Niare N. Armstrong A. Djimdé M.A. Thera F. Fenollar D. Raoult M. Million |
author_sort |
S. Konate |
title |
Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali |
title_short |
Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali |
title_full |
Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali |
title_fullStr |
Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali |
title_full_unstemmed |
Virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in Mali |
title_sort |
virgibacillus doumboii sp. nov., a halophilic bacterium isolated from the stool of a healthy child in mali |
publisher |
Elsevier |
series |
New Microbes and New Infections |
issn |
2052-2975 |
publishDate |
2021-07-01 |
description |
A moderately halophilic and strictly aerobic bacterium was isolated from a human stool as part of a study on the diagnosis of childhood malnutrition in Mali. Strain Marseille-Q1616T is a Gram-stain-positive, rod-shaped, catalase-positive and oxidase-negative bacterium. It has a genome size of 3.91 Mbp with 39.79% G+C content, which contains 3954 protein-coding genes including genes encoding phosphomycin resistance and Listeria monocytogenes, 16 rRNA genes and 64 tRNA genes. Strain Marseille-Q1616T exhibited a 96.3% 16S rRNA gene sequence similarity and shared an OrthoANI value of 70.64% (the highest observed) with Virgibacillus kekensis, the phylogenetically closest validly published species. Based on phenotypic and phylogenetic evidence and genomic average nucleotide identity values, we suggest the creation of a new species within the Virgibacillus genus, named Virgibacillus doumboii sp. nov., type strain Marseille-Q1616T (= CSURQ1616). |
topic |
Child malnutrition culturomics Mali taxonogenomics Virgibacillus doumboii sp. nov. |
url |
http://www.sciencedirect.com/science/article/pii/S2052297521000548 |
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