Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum
While hybridization probe-based real-time PCR assays targeting highly repetitive multi-copy genome sequences for the diagnosis of <i>S. mansoni</i> complex or <i>S. haematobium</i> complex from human serum are well established, reports on the evaluation of respective assays f...
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doaj-5a1f9626d0094fec8c6c74cc800abecb2021-08-26T14:12:00ZengMDPI AGPathogens2076-08172021-08-01101067106710.3390/pathogens10081067Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human SerumHagen Frickmann0Ulrike Loderstädt1Beatrice Nickel2Sven Poppert3Peter Odermatt4Somphou Sayasone5Marjan Van Esbroeck6Isabel Micalessi7Lieselotte Cnops8Poom Adisakwattana9Gérard Leboulle10Olfert Landt11Thorsten Thye12Egbert Tannich13Department of Microbiology and Hospital Hygiene, Bundeswehr Hospital Hamburg, 20359 Hamburg, GermanyDepartment of Hospital Hygiene & Infectious Diseases, University Medicine Göttingen, 37075 Göttingen, GermanySwiss Tropical and Public Health Institute, 4051 Basel, SwitzerlandSwiss Tropical and Public Health Institute, 4051 Basel, SwitzerlandSwiss Tropical and Public Health Institute, 4051 Basel, SwitzerlandLao Tropical and Public Health Institute, Vientiane Capital 01000, LaosDepartment of Clinical Sciences, Institute of Tropical Medicine, 2000 Antwerp, BelgiumDepartment of Clinical Sciences, Institute of Tropical Medicine, 2000 Antwerp, BelgiumDepartment of Clinical Sciences, Institute of Tropical Medicine, 2000 Antwerp, BelgiumDepartment of Helminthology, Faculty of Tropical Medicine, Mahidol University, Bangkok 10400, ThailandTIB MOLBIOL, 12103 Berlin, GermanyTIB MOLBIOL, 12103 Berlin, GermanyDepartment Infectious Disease Epidemiology, Bernhard Nocht Institute for Tropical Medicine Hamburg, 20359 Hamburg, GermanyNational Reference Centre for Tropical Pathogens, Bernhard Nocht Institute for Tropical Medicine Hamburg, 20359 Hamburg, GermanyWhile hybridization probe-based real-time PCR assays targeting highly repetitive multi-copy genome sequences for the diagnosis of <i>S. mansoni</i> complex or <i>S. haematobium</i> complex from human serum are well established, reports on the evaluation of respective assays for the identification of <i>S. japonicum</i> complex DNA in human serum are scarce. Here, we assessed the potential use of the retrotransposon sequences <i>SjR2</i> and <i>SjCHGCS19</i> from <i>S. japonicum</i>, <i>S. mekongi</i> and <i>S. malayensis</i> for the diagnosis of Asian <i>Schistosoma</i> infections. Based on available <i>S. japonicum</i> sequences and newly provided <i>S. mekongi</i> and <i>S. malayensis</i> sequences, hybridization probe-based real-time PCRs targeting <i>SjR2</i> and <i>SjCHGCS19</i> of the <i>S. japonicum</i> complex were designed both as consensus primer assays as well as multi-primer assays for the coverage of multiple variants of the target sequences. The assays were established using plasmids and <i>S. mekongi</i> DNA. While the consensus primer assays failed to detect <i>S. mekongi</i> DNA in human serum samples, the multi-primer assays showed positive or borderline positive results but only in 9.8% (6/61) of serum samples from patients with confirmed <i>S. mekongi</i> infections. Some cross-reactions with samples positive for <i>S. mansoni</i> or <i>S. haematobium</i> were observed but with the <i>SjCHGCS19</i>-PCR only. In spite of the low sensitivity, the presented experience may guide future evaluations of <i>S. japonicum-</i>complex-specific PCRs from human serum.https://www.mdpi.com/2076-0817/10/8/1067<i>Schistosoma mekongi</i><i>Schistosoma malayensis</i>hybridization probetest evaluationdiagnosisretrotransposon |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Hagen Frickmann Ulrike Loderstädt Beatrice Nickel Sven Poppert Peter Odermatt Somphou Sayasone Marjan Van Esbroeck Isabel Micalessi Lieselotte Cnops Poom Adisakwattana Gérard Leboulle Olfert Landt Thorsten Thye Egbert Tannich |
spellingShingle |
Hagen Frickmann Ulrike Loderstädt Beatrice Nickel Sven Poppert Peter Odermatt Somphou Sayasone Marjan Van Esbroeck Isabel Micalessi Lieselotte Cnops Poom Adisakwattana Gérard Leboulle Olfert Landt Thorsten Thye Egbert Tannich Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum Pathogens <i>Schistosoma mekongi</i> <i>Schistosoma malayensis</i> hybridization probe test evaluation diagnosis retrotransposon |
author_facet |
Hagen Frickmann Ulrike Loderstädt Beatrice Nickel Sven Poppert Peter Odermatt Somphou Sayasone Marjan Van Esbroeck Isabel Micalessi Lieselotte Cnops Poom Adisakwattana Gérard Leboulle Olfert Landt Thorsten Thye Egbert Tannich |
author_sort |
Hagen Frickmann |
title |
Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum |
title_short |
Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum |
title_full |
Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum |
title_fullStr |
Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum |
title_full_unstemmed |
Low Sensitivity of Real Time PCRs Targeting Retrotransposon Sequences for the Detection of <i>Schistosoma japonicum</i> Complex DNA in Human Serum |
title_sort |
low sensitivity of real time pcrs targeting retrotransposon sequences for the detection of <i>schistosoma japonicum</i> complex dna in human serum |
publisher |
MDPI AG |
series |
Pathogens |
issn |
2076-0817 |
publishDate |
2021-08-01 |
description |
While hybridization probe-based real-time PCR assays targeting highly repetitive multi-copy genome sequences for the diagnosis of <i>S. mansoni</i> complex or <i>S. haematobium</i> complex from human serum are well established, reports on the evaluation of respective assays for the identification of <i>S. japonicum</i> complex DNA in human serum are scarce. Here, we assessed the potential use of the retrotransposon sequences <i>SjR2</i> and <i>SjCHGCS19</i> from <i>S. japonicum</i>, <i>S. mekongi</i> and <i>S. malayensis</i> for the diagnosis of Asian <i>Schistosoma</i> infections. Based on available <i>S. japonicum</i> sequences and newly provided <i>S. mekongi</i> and <i>S. malayensis</i> sequences, hybridization probe-based real-time PCRs targeting <i>SjR2</i> and <i>SjCHGCS19</i> of the <i>S. japonicum</i> complex were designed both as consensus primer assays as well as multi-primer assays for the coverage of multiple variants of the target sequences. The assays were established using plasmids and <i>S. mekongi</i> DNA. While the consensus primer assays failed to detect <i>S. mekongi</i> DNA in human serum samples, the multi-primer assays showed positive or borderline positive results but only in 9.8% (6/61) of serum samples from patients with confirmed <i>S. mekongi</i> infections. Some cross-reactions with samples positive for <i>S. mansoni</i> or <i>S. haematobium</i> were observed but with the <i>SjCHGCS19</i>-PCR only. In spite of the low sensitivity, the presented experience may guide future evaluations of <i>S. japonicum-</i>complex-specific PCRs from human serum. |
topic |
<i>Schistosoma mekongi</i> <i>Schistosoma malayensis</i> hybridization probe test evaluation diagnosis retrotransposon |
url |
https://www.mdpi.com/2076-0817/10/8/1067 |
work_keys_str_mv |
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