Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these...
Main Authors: | , , |
---|---|
Format: | Article |
Language: | English |
Published: |
MDPI AG
2021-01-01
|
Series: | International Journal of Molecular Sciences |
Subjects: | |
Online Access: | https://www.mdpi.com/1422-0067/22/3/1086 |
id |
doaj-5b06b81a1c884c15a522c393bb8c08fc |
---|---|
record_format |
Article |
spelling |
doaj-5b06b81a1c884c15a522c393bb8c08fc2021-01-23T00:05:48ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672021-01-01221086108610.3390/ijms22031086Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component MaterialsShunji Yamada0Eisuke Chikayama1Jun Kikuchi2Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, JapanEnvironmental Metabolic Analysis Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, JapanGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, JapanSolid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as <i>Euglena gracilis</i>. During cellulose degradation, <sup>13</sup>C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO<sub>2</sub>. Using these methods, the <sup>1</sup>H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design.https://www.mdpi.com/1422-0067/22/3/1086solid-state NMRshort-time Fourier transformsignal deconvolutionpredictionanisotropy<i>T</i><sub>2</sub> relaxation |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Shunji Yamada Eisuke Chikayama Jun Kikuchi |
spellingShingle |
Shunji Yamada Eisuke Chikayama Jun Kikuchi Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials International Journal of Molecular Sciences solid-state NMR short-time Fourier transform signal deconvolution prediction anisotropy <i>T</i><sub>2</sub> relaxation |
author_facet |
Shunji Yamada Eisuke Chikayama Jun Kikuchi |
author_sort |
Shunji Yamada |
title |
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials |
title_short |
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials |
title_full |
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials |
title_fullStr |
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials |
title_full_unstemmed |
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials |
title_sort |
signal deconvolution and generative topographic mapping regression for solid-state nmr of multi-component materials |
publisher |
MDPI AG |
series |
International Journal of Molecular Sciences |
issn |
1661-6596 1422-0067 |
publishDate |
2021-01-01 |
description |
Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as <i>Euglena gracilis</i>. During cellulose degradation, <sup>13</sup>C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO<sub>2</sub>. Using these methods, the <sup>1</sup>H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design. |
topic |
solid-state NMR short-time Fourier transform signal deconvolution prediction anisotropy <i>T</i><sub>2</sub> relaxation |
url |
https://www.mdpi.com/1422-0067/22/3/1086 |
work_keys_str_mv |
AT shunjiyamada signaldeconvolutionandgenerativetopographicmappingregressionforsolidstatenmrofmulticomponentmaterials AT eisukechikayama signaldeconvolutionandgenerativetopographicmappingregressionforsolidstatenmrofmulticomponentmaterials AT junkikuchi signaldeconvolutionandgenerativetopographicmappingregressionforsolidstatenmrofmulticomponentmaterials |
_version_ |
1724327217982341120 |