Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials

Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these...

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Main Authors: Shunji Yamada, Eisuke Chikayama, Jun Kikuchi
Format: Article
Language:English
Published: MDPI AG 2021-01-01
Series:International Journal of Molecular Sciences
Subjects:
Online Access:https://www.mdpi.com/1422-0067/22/3/1086
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spelling doaj-5b06b81a1c884c15a522c393bb8c08fc2021-01-23T00:05:48ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672021-01-01221086108610.3390/ijms22031086Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component MaterialsShunji Yamada0Eisuke Chikayama1Jun Kikuchi2Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, JapanEnvironmental Metabolic Analysis Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, JapanGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, JapanSolid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as <i>Euglena gracilis</i>. During cellulose degradation, <sup>13</sup>C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO<sub>2</sub>. Using these methods, the <sup>1</sup>H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design.https://www.mdpi.com/1422-0067/22/3/1086solid-state NMRshort-time Fourier transformsignal deconvolutionpredictionanisotropy<i>T</i><sub>2</sub> relaxation
collection DOAJ
language English
format Article
sources DOAJ
author Shunji Yamada
Eisuke Chikayama
Jun Kikuchi
spellingShingle Shunji Yamada
Eisuke Chikayama
Jun Kikuchi
Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
International Journal of Molecular Sciences
solid-state NMR
short-time Fourier transform
signal deconvolution
prediction
anisotropy
<i>T</i><sub>2</sub> relaxation
author_facet Shunji Yamada
Eisuke Chikayama
Jun Kikuchi
author_sort Shunji Yamada
title Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_short Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_full Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_fullStr Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_full_unstemmed Signal Deconvolution and Generative Topographic Mapping Regression for Solid-State NMR of Multi-Component Materials
title_sort signal deconvolution and generative topographic mapping regression for solid-state nmr of multi-component materials
publisher MDPI AG
series International Journal of Molecular Sciences
issn 1661-6596
1422-0067
publishDate 2021-01-01
description Solid-state nuclear magnetic resonance (ssNMR) spectroscopy provides information on native structures and the dynamics for predicting and designing the physical properties of multi-component solid materials. However, such an analysis is difficult because of the broad and overlapping spectra of these materials. Therefore, signal deconvolution and prediction are great challenges for their ssNMR analysis. We examined signal deconvolution methods using a short-time Fourier transform (STFT) and a non-negative tensor/matrix factorization (NTF, NMF), and methods for predicting NMR signals and physical properties using generative topographic mapping regression (GTMR). We demonstrated the applications for macromolecular samples involved in cellulose degradation, plastics, and microalgae such as <i>Euglena gracilis</i>. During cellulose degradation, <sup>13</sup>C cross-polarization (CP)–magic angle spinning spectra were separated into signals of cellulose, proteins, and lipids by STFT and NTF. GTMR accurately predicted cellulose degradation for catabolic products such as acetate and CO<sub>2</sub>. Using these methods, the <sup>1</sup>H anisotropic spectrum of poly-ε-caprolactone was separated into the signals of crystalline and amorphous solids. Forward prediction and inverse prediction of GTMR were used to compute STFT-processed NMR signals from the physical properties of polylactic acid. These signal deconvolution and prediction methods for ssNMR spectra of macromolecules can resolve the problem of overlapping spectra and support macromolecular characterization and material design.
topic solid-state NMR
short-time Fourier transform
signal deconvolution
prediction
anisotropy
<i>T</i><sub>2</sub> relaxation
url https://www.mdpi.com/1422-0067/22/3/1086
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AT junkikuchi signaldeconvolutionandgenerativetopographicmappingregressionforsolidstatenmrofmulticomponentmaterials
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