Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.

Metabotropic glutamate receptor 1 (GRM1) signaling has been implicated in benign and malignant disorders including prostate cancer (PCa). To further explore the role of genetic alterations of GRM1 in PCa, we screened the entire human GRM1 gene including coding sequence, exon-intron junctions, and fl...

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Main Authors: Shafat Ali, Mojgan Shourideh, Shahriar Koochekpour
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2014-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC4111546?pdf=render
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spelling doaj-5b2a9a62c6644e82b0c7fce0a0bea36c2020-11-25T02:42:40ZengPublic Library of Science (PLoS)PLoS ONE1932-62032014-01-0197e10320410.1371/journal.pone.0103204Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.Shafat AliMojgan ShouridehShahriar KoochekpourMetabotropic glutamate receptor 1 (GRM1) signaling has been implicated in benign and malignant disorders including prostate cancer (PCa). To further explore the role of genetic alterations of GRM1 in PCa, we screened the entire human GRM1 gene including coding sequence, exon-intron junctions, and flanking untranslated regions (UTRs) for the presence of mutations and single nucleotide polymorphisms (SNPs) in several PCa cell lines and matched tumor-normal tissues from Caucasian Americans (CAs) and African Americans (AAs). We used bidirectional sequencing, allele-specific PCR, and bioinformatics to identify the genetic changes in GRM1 and to predict their functional role. A novel missense mutation identified at C1744T (582 Pro > Ser) position of GRM1 gene in a primary AA-PCa cell line (E006AA) was predicted to affect the protein stability and functions. Another novel mutation identified at exon-intron junction of exon-8 in C4-2B cell line resulted in alteration of the GRM1 splicing donor site. In addition, we found missense SNP at T2977C (993 Ser > Pro) position and multiple non-coding mutations and SNPs in 3'-UTR of GRM1 gene in PCa cell lines and tissues. These novel mutations may contribute to the disease by alterations in GRM1 gene splicing, receptor activation, and post-receptor downstream signaling.http://europepmc.org/articles/PMC4111546?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Shafat Ali
Mojgan Shourideh
Shahriar Koochekpour
spellingShingle Shafat Ali
Mojgan Shourideh
Shahriar Koochekpour
Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
PLoS ONE
author_facet Shafat Ali
Mojgan Shourideh
Shahriar Koochekpour
author_sort Shafat Ali
title Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
title_short Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
title_full Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
title_fullStr Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
title_full_unstemmed Identification of novel GRM1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
title_sort identification of novel grm1 mutations and single nucleotide polymorphisms in prostate cancer cell lines and tissues.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2014-01-01
description Metabotropic glutamate receptor 1 (GRM1) signaling has been implicated in benign and malignant disorders including prostate cancer (PCa). To further explore the role of genetic alterations of GRM1 in PCa, we screened the entire human GRM1 gene including coding sequence, exon-intron junctions, and flanking untranslated regions (UTRs) for the presence of mutations and single nucleotide polymorphisms (SNPs) in several PCa cell lines and matched tumor-normal tissues from Caucasian Americans (CAs) and African Americans (AAs). We used bidirectional sequencing, allele-specific PCR, and bioinformatics to identify the genetic changes in GRM1 and to predict their functional role. A novel missense mutation identified at C1744T (582 Pro > Ser) position of GRM1 gene in a primary AA-PCa cell line (E006AA) was predicted to affect the protein stability and functions. Another novel mutation identified at exon-intron junction of exon-8 in C4-2B cell line resulted in alteration of the GRM1 splicing donor site. In addition, we found missense SNP at T2977C (993 Ser > Pro) position and multiple non-coding mutations and SNPs in 3'-UTR of GRM1 gene in PCa cell lines and tissues. These novel mutations may contribute to the disease by alterations in GRM1 gene splicing, receptor activation, and post-receptor downstream signaling.
url http://europepmc.org/articles/PMC4111546?pdf=render
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AT shahriarkoochekpour identificationofnovelgrm1mutationsandsinglenucleotidepolymorphismsinprostatecancercelllinesandtissues
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