RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer

RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer

Invasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient...

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Main Authors: Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang
Format: Article
Language:English
Published: Elsevier 2018-06-01
Series:Data in Brief
Online Access:http://www.sciencedirect.com/science/article/pii/S2352340918302920
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spelling doaj-5c33ece6ea574222a184eb457361bce82020-11-25T01:38:02ZengElsevierData in Brief2352-34092018-06-0118736739RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancerJi Hyung Hong0Yoon Ho Ko1Keunsoo Kang2Division of Oncology, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Republic of KoreaDivision of Oncology, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea; Cancer Research Institute, College of Medicine, The Catholic University of Korea, Seoul, Republic of KoreaDepartment of Microbiology, College of Natural Sciences, Dankook University, Cheonan 31116, Republic of KoreaInvasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient (luminal B subtype). Differentially expressed genes (DEGs) were identified with a false discovery rate (FDR)-adjusted p-value of 0.05. Gene ontology analysis identified several key pathways, including lymphocyte activation. A list of differentially expressed genes is provided. The raw data was uploaded to the sequence read archive (SRA) database and the BioProject ID is PRJNA432903. Keywords: Breast cancer, Luminal B subtype, Invasive ductal carcinoma, RNA-seq, Koreanhttp://www.sciencedirect.com/science/article/pii/S2352340918302920
collection DOAJ
language English
format Article
sources DOAJ
author Ji Hyung Hong
Yoon Ho Ko
Keunsoo Kang
spellingShingle Ji Hyung Hong
Yoon Ho Ko
Keunsoo Kang
RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
Data in Brief
author_facet Ji Hyung Hong
Yoon Ho Ko
Keunsoo Kang
author_sort Ji Hyung Hong
title RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_short RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_full RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_fullStr RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_full_unstemmed RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_sort rna-seq data of invasive ductal carcinoma and adjacent normal tissues from a korean patient with breast cancer
publisher Elsevier
series Data in Brief
issn 2352-3409
publishDate 2018-06-01
description Invasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient (luminal B subtype). Differentially expressed genes (DEGs) were identified with a false discovery rate (FDR)-adjusted p-value of 0.05. Gene ontology analysis identified several key pathways, including lymphocyte activation. A list of differentially expressed genes is provided. The raw data was uploaded to the sequence read archive (SRA) database and the BioProject ID is PRJNA432903. Keywords: Breast cancer, Luminal B subtype, Invasive ductal carcinoma, RNA-seq, Korean
url http://www.sciencedirect.com/science/article/pii/S2352340918302920
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AT yoonhoko rnaseqdataofinvasiveductalcarcinomaandadjacentnormaltissuesfromakoreanpatientwithbreastcancer
AT keunsookang rnaseqdataofinvasiveductalcarcinomaandadjacentnormaltissuesfromakoreanpatientwithbreastcancer
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