Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
Preharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two whe...
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doaj-60d5a04e6f6541e798eb8c04c006d5662021-04-15T23:05:49ZengMDPI AGApplied Sciences2076-34172021-04-01113562356210.3390/app11083562Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)Yong Jin Lee0Sang Yong Park1Dae Yeon Kim2Jae Yoon Kim3Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, KoreaDepartment of Plant Resources, College of Industrial Science, Kongju National University, Yesan 32439, KoreaDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, KoreaDepartment of Plant Resources, College of Industrial Science, Kongju National University, Yesan 32439, KoreaPreharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two wheat cultivars that differ in PHS tolerance. A total of 123 unigenes related to hormone metabolism and signaling for abscisic acid (ABA), gibberellic acid (GA), indole-3-acetic acid (IAA), and cytokinin were identified and 1862 of differentially expressed genes were identified and divided into 8 groups by transcriptomic analysis. DEG analysis showed the majority of genes were categorized in sugar related processes, which interact with ABA signaling in PHS tolerant cultivar under PHS-induction. Thus, genes related to ABA are key regulators of dormancy and germination. Our results give insight into global changes in expression of plant hormone related genes in response to PHS.https://www.mdpi.com/2076-3417/11/8/3562wheat <i>(Triticum aestivum)</i>pre-harvest sprouting (PHS)phytohormonesdifferentially expressed genes (DEGs)transcriptomes |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Yong Jin Lee Sang Yong Park Dae Yeon Kim Jae Yoon Kim |
spellingShingle |
Yong Jin Lee Sang Yong Park Dae Yeon Kim Jae Yoon Kim Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) Applied Sciences wheat <i>(Triticum aestivum)</i> pre-harvest sprouting (PHS) phytohormones differentially expressed genes (DEGs) transcriptomes |
author_facet |
Yong Jin Lee Sang Yong Park Dae Yeon Kim Jae Yoon Kim |
author_sort |
Yong Jin Lee |
title |
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) |
title_short |
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) |
title_full |
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) |
title_fullStr |
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) |
title_full_unstemmed |
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA) |
title_sort |
differential expression analysis of phytohormone-related genes of korean wheat (<i>triticum aestivum</i>) in response to preharvest sprouting and abscisic acid (aba) |
publisher |
MDPI AG |
series |
Applied Sciences |
issn |
2076-3417 |
publishDate |
2021-04-01 |
description |
Preharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two wheat cultivars that differ in PHS tolerance. A total of 123 unigenes related to hormone metabolism and signaling for abscisic acid (ABA), gibberellic acid (GA), indole-3-acetic acid (IAA), and cytokinin were identified and 1862 of differentially expressed genes were identified and divided into 8 groups by transcriptomic analysis. DEG analysis showed the majority of genes were categorized in sugar related processes, which interact with ABA signaling in PHS tolerant cultivar under PHS-induction. Thus, genes related to ABA are key regulators of dormancy and germination. Our results give insight into global changes in expression of plant hormone related genes in response to PHS. |
topic |
wheat <i>(Triticum aestivum)</i> pre-harvest sprouting (PHS) phytohormones differentially expressed genes (DEGs) transcriptomes |
url |
https://www.mdpi.com/2076-3417/11/8/3562 |
work_keys_str_mv |
AT yongjinlee differentialexpressionanalysisofphytohormonerelatedgenesofkoreanwheatitriticumaestivumiinresponsetopreharvestsproutingandabscisicacidaba AT sangyongpark differentialexpressionanalysisofphytohormonerelatedgenesofkoreanwheatitriticumaestivumiinresponsetopreharvestsproutingandabscisicacidaba AT daeyeonkim differentialexpressionanalysisofphytohormonerelatedgenesofkoreanwheatitriticumaestivumiinresponsetopreharvestsproutingandabscisicacidaba AT jaeyoonkim differentialexpressionanalysisofphytohormonerelatedgenesofkoreanwheatitriticumaestivumiinresponsetopreharvestsproutingandabscisicacidaba |
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1721525843282362368 |