Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)

Preharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two whe...

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Main Authors: Yong Jin Lee, Sang Yong Park, Dae Yeon Kim, Jae Yoon Kim
Format: Article
Language:English
Published: MDPI AG 2021-04-01
Series:Applied Sciences
Subjects:
Online Access:https://www.mdpi.com/2076-3417/11/8/3562
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spelling doaj-60d5a04e6f6541e798eb8c04c006d5662021-04-15T23:05:49ZengMDPI AGApplied Sciences2076-34172021-04-01113562356210.3390/app11083562Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)Yong Jin Lee0Sang Yong Park1Dae Yeon Kim2Jae Yoon Kim3Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, KoreaDepartment of Plant Resources, College of Industrial Science, Kongju National University, Yesan 32439, KoreaDivision of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, KoreaDepartment of Plant Resources, College of Industrial Science, Kongju National University, Yesan 32439, KoreaPreharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two wheat cultivars that differ in PHS tolerance. A total of 123 unigenes related to hormone metabolism and signaling for abscisic acid (ABA), gibberellic acid (GA), indole-3-acetic acid (IAA), and cytokinin were identified and 1862 of differentially expressed genes were identified and divided into 8 groups by transcriptomic analysis. DEG analysis showed the majority of genes were categorized in sugar related processes, which interact with ABA signaling in PHS tolerant cultivar under PHS-induction. Thus, genes related to ABA are key regulators of dormancy and germination. Our results give insight into global changes in expression of plant hormone related genes in response to PHS.https://www.mdpi.com/2076-3417/11/8/3562wheat <i>(Triticum aestivum)</i>pre-harvest sprouting (PHS)phytohormonesdifferentially expressed genes (DEGs)transcriptomes
collection DOAJ
language English
format Article
sources DOAJ
author Yong Jin Lee
Sang Yong Park
Dae Yeon Kim
Jae Yoon Kim
spellingShingle Yong Jin Lee
Sang Yong Park
Dae Yeon Kim
Jae Yoon Kim
Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
Applied Sciences
wheat <i>(Triticum aestivum)</i>
pre-harvest sprouting (PHS)
phytohormones
differentially expressed genes (DEGs)
transcriptomes
author_facet Yong Jin Lee
Sang Yong Park
Dae Yeon Kim
Jae Yoon Kim
author_sort Yong Jin Lee
title Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
title_short Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
title_full Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
title_fullStr Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
title_full_unstemmed Differential Expression Analysis of Phytohormone-Related Genes of Korean Wheat (<i>Triticum aestivum</i>) in Response to Preharvest Sprouting and Abscisic Acid (ABA)
title_sort differential expression analysis of phytohormone-related genes of korean wheat (<i>triticum aestivum</i>) in response to preharvest sprouting and abscisic acid (aba)
publisher MDPI AG
series Applied Sciences
issn 2076-3417
publishDate 2021-04-01
description Preharvest sprouting (PHS) is a key global issue in production and end-use quality of cereals, particularly in regions where the rainfall season overlaps the harvest. To investigate transcriptomic changes in genes affected by PHS-induction and ABA-treatment, RNA-seq analysis was performed in two wheat cultivars that differ in PHS tolerance. A total of 123 unigenes related to hormone metabolism and signaling for abscisic acid (ABA), gibberellic acid (GA), indole-3-acetic acid (IAA), and cytokinin were identified and 1862 of differentially expressed genes were identified and divided into 8 groups by transcriptomic analysis. DEG analysis showed the majority of genes were categorized in sugar related processes, which interact with ABA signaling in PHS tolerant cultivar under PHS-induction. Thus, genes related to ABA are key regulators of dormancy and germination. Our results give insight into global changes in expression of plant hormone related genes in response to PHS.
topic wheat <i>(Triticum aestivum)</i>
pre-harvest sprouting (PHS)
phytohormones
differentially expressed genes (DEGs)
transcriptomes
url https://www.mdpi.com/2076-3417/11/8/3562
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