Detection of human papillomavirus in cases of head and neck squamous cell carcinoma by RNA‐seq and VirTect

Detection of human papillomavirus in cases of head and neck squamous cell carcinoma by RNA‐seq and VirTect

Next‐generation sequencing provides an opportunity to detect viral species from RNA‐seq data of human tissues, but existing computational approaches do not perform optimally on clinical samples. We developed a bioinformatic method called VirTect for detecting viruses in neoplastic human tissues usin...

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Bibliographic Details
Main Authors: Atlas Khan, Qian Liu, Xuelian Chen, Andres Stucky, Parish P. Sedghizadeh, Daniel Adelpour, Xi Zhang, Kai Wang, Jiang F. Zhong
Format: Article
Language:English
Published: Wiley 2019-04-01
Series:Molecular Oncology
Subjects:
carcinogenesis
head and neck squamous cell carcinoma
human papillomavirus
RNA‐seq
viral detection
VirTect
Online Access:https://doi.org/10.1002/1878-0261.12435

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