Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species

Bovidae, the largest family in Pecora infraorder, are characterized by a striking variability in diploid number of chromosomes between species and among individuals within a species. The bovid X chromosome is also remarkably variable, with several morphological types in the family. Here we built a d...

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Main Authors: Anastasia A. Proskuryakova, Anastasia I. Kulemzina, Polina L. Perelman, Dmitry V. Yudkin, Natalya A. Lemskaya, Innokentii M. Okhlopkov, Egor V. Kirillin, Marta Farré, Denis M. Larkin, Melody E. Roelke-Parker, Stephen J. O’Brien, Mitchell Bush, Alexander S. Graphodatsky
Format: Article
Language:English
Published: MDPI AG 2019-10-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/10/11/857
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spelling doaj-6b104e9aff3c4705810e54e2651cb7d22020-11-25T01:50:57ZengMDPI AGGenes2073-44252019-10-01101185710.3390/genes10110857genes10110857Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae SpeciesAnastasia A. Proskuryakova0Anastasia I. Kulemzina1Polina L. Perelman2Dmitry V. Yudkin3Natalya A. Lemskaya4Innokentii M. Okhlopkov5Egor V. Kirillin6Marta Farré7Denis M. Larkin8Melody E. Roelke-Parker9Stephen J. O’Brien10Mitchell Bush11Alexander S. Graphodatsky12Institute of Molecular and Cellular Biology, SB RAS, 630090 Novosibirsk, RussiaInstitute of Molecular and Cellular Biology, SB RAS, 630090 Novosibirsk, RussiaInstitute of Molecular and Cellular Biology, SB RAS, 630090 Novosibirsk, RussiaState Research Center of Virology and Biotechnology “Vector”, Federal Service for Surveillance on Consumer Rights Protection and Human Well-being (FBRI SRC VB “Vector”, Rospotrebnadzor), 630559 Koltsovo, Novosibirsk Region, RussiaInstitute of Molecular and Cellular Biology, SB RAS, 630090 Novosibirsk, RussiaInstitute for Biological Problems of Cryolithozone Siberian Branch of RAS, 677980 Yakutsk, RussiaInstitute for Biological Problems of Cryolithozone Siberian Branch of RAS, 677980 Yakutsk, RussiaThe Royal Veterinary College, Royal College Street, University of London, London NW1 0TU, UKThe Royal Veterinary College, Royal College Street, University of London, London NW1 0TU, UKFrederick National Laboratory of Cancer Research, Leidos Biomedical Research, Inc., Frederick, MD 21701, USATheodosius Dobzhansky Center for Genome Bioinformatics, Saint-Petersburg State University, Sredniy Av. 41A, 199034 Saint-Petersburg, RussiaThe Center for Species Survival, Department of Reproductive Sciences, Smithsonian Conservation Biology Institute, Smithsonian’s National Zoological Park, 1500 Remount Road, Front Royal, VA 22630, USAInstitute of Molecular and Cellular Biology, SB RAS, 630090 Novosibirsk, RussiaBovidae, the largest family in Pecora infraorder, are characterized by a striking variability in diploid number of chromosomes between species and among individuals within a species. The bovid X chromosome is also remarkably variable, with several morphological types in the family. Here we built a detailed chromosome map of musk ox (<i>Ovibos moschatus</i>), a relic species originating from Pleistocene megafauna, with dromedary and human probes using chromosome painting. We trace chromosomal rearrangements during Bovidae evolution by comparing species already studied by chromosome painting. The musk ox karyotype differs from the ancestral pecoran karyotype by six fusions, one fission, and three inversions. We discuss changes in pecoran ancestral karyotype in the light of new painting data. Variations in the X chromosome structure of four bovid species nilgai bull (<i>Boselaphus tragocamelus</i>), saola (<i>Pseudoryx nghetinhensis</i>), gaur (<i>Bos gaurus</i>), and Kirk&#8217;s Dikdik (<i>Madoqua kirkii</i>) were further analyzed using 26 cattle BAC-clones. We found the duplication on the X in saola. We show main rearrangements leading to the formation of four types of bovid X: Bovinae type with derived cattle subtype formed by centromere reposition and Antilopinae type with Caprini subtype formed by inversion in XSB1.https://www.mdpi.com/2073-4425/10/11/857bac-cloneschromosome paintingkirk’s dikdikmusk oxsaolanilgai bullgaur
collection DOAJ
language English
format Article
sources DOAJ
author Anastasia A. Proskuryakova
Anastasia I. Kulemzina
Polina L. Perelman
Dmitry V. Yudkin
Natalya A. Lemskaya
Innokentii M. Okhlopkov
Egor V. Kirillin
Marta Farré
Denis M. Larkin
Melody E. Roelke-Parker
Stephen J. O’Brien
Mitchell Bush
Alexander S. Graphodatsky
spellingShingle Anastasia A. Proskuryakova
Anastasia I. Kulemzina
Polina L. Perelman
Dmitry V. Yudkin
Natalya A. Lemskaya
Innokentii M. Okhlopkov
Egor V. Kirillin
Marta Farré
Denis M. Larkin
Melody E. Roelke-Parker
Stephen J. O’Brien
Mitchell Bush
Alexander S. Graphodatsky
Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
Genes
bac-clones
chromosome painting
kirk’s dikdik
musk ox
saola
nilgai bull
gaur
author_facet Anastasia A. Proskuryakova
Anastasia I. Kulemzina
Polina L. Perelman
Dmitry V. Yudkin
Natalya A. Lemskaya
Innokentii M. Okhlopkov
Egor V. Kirillin
Marta Farré
Denis M. Larkin
Melody E. Roelke-Parker
Stephen J. O’Brien
Mitchell Bush
Alexander S. Graphodatsky
author_sort Anastasia A. Proskuryakova
title Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
title_short Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
title_full Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
title_fullStr Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
title_full_unstemmed Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
title_sort comparative chromosome mapping of musk ox and the x chromosome among some bovidae species
publisher MDPI AG
series Genes
issn 2073-4425
publishDate 2019-10-01
description Bovidae, the largest family in Pecora infraorder, are characterized by a striking variability in diploid number of chromosomes between species and among individuals within a species. The bovid X chromosome is also remarkably variable, with several morphological types in the family. Here we built a detailed chromosome map of musk ox (<i>Ovibos moschatus</i>), a relic species originating from Pleistocene megafauna, with dromedary and human probes using chromosome painting. We trace chromosomal rearrangements during Bovidae evolution by comparing species already studied by chromosome painting. The musk ox karyotype differs from the ancestral pecoran karyotype by six fusions, one fission, and three inversions. We discuss changes in pecoran ancestral karyotype in the light of new painting data. Variations in the X chromosome structure of four bovid species nilgai bull (<i>Boselaphus tragocamelus</i>), saola (<i>Pseudoryx nghetinhensis</i>), gaur (<i>Bos gaurus</i>), and Kirk&#8217;s Dikdik (<i>Madoqua kirkii</i>) were further analyzed using 26 cattle BAC-clones. We found the duplication on the X in saola. We show main rearrangements leading to the formation of four types of bovid X: Bovinae type with derived cattle subtype formed by centromere reposition and Antilopinae type with Caprini subtype formed by inversion in XSB1.
topic bac-clones
chromosome painting
kirk’s dikdik
musk ox
saola
nilgai bull
gaur
url https://www.mdpi.com/2073-4425/10/11/857
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