Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Abstract Background The larvacean Oikopleura dioica is an abundant tunicate plankton with the smallest (65–70 Mbp) non-parasitic, non-extremophile animal genome identified to date. Currently, there are two genomes available for the Bergen (OdB3) and Osaka (OSKA2016) O. dioica laboratory strains. Bot...

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Bibliographic Details
Main Authors: Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Charlotte West, Tanmay Rustagi, Hsiao-Chiao Chien, Saurabh Kumar, Julien Pichon, Charles Plessy, Nicholas M. Luscombe
Format: Article
Language:English
Published: BMC 2021-03-01
Series:BMC Genomics
Subjects:
Oikopleura dioica
Oxford Nanopore sequencing
Hi-C
Telomere-to-telomere
Chromosome-scale assembly
Single individual
Online Access:https://doi.org/10.1186/s12864-021-07512-6

Internet

https://doi.org/10.1186/s12864-021-07512-6

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