BRANT: A Versatile and Extendable Resting-State fMRI Toolkit
Data processing toolboxes for resting-state functional MRI (rs-fMRI) have provided us with a variety of functions and user friendly graphic user interfaces (GUIs). However, many toolboxes only cover a certain range of functions, and use exclusively designed GUIs. To facilitate data processing and al...
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doaj-6f00660a225a4920b8543d434d21a8772020-11-24T23:10:34ZengFrontiers Media S.A.Frontiers in Neuroinformatics1662-51962018-09-011210.3389/fninf.2018.00052350925BRANT: A Versatile and Extendable Resting-State fMRI ToolkitKaibin Xu0Kaibin Xu1Kaibin Xu2Kaibin Xu3Yong Liu4Yong Liu5Yong Liu6Yong Liu7Yafeng Zhan8Yafeng Zhan9Jiaji Ren10Jiaji Ren11Jiaji Ren12Tianzi Jiang13Tianzi Jiang14Tianzi Jiang15Tianzi Jiang16Tianzi Jiang17Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaNational Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaSino-Danish Center for Education and Research, Beijing, ChinaSino-Danish College, University of Chinese Academy of Sciences, Beijing, ChinaBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaNational Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaSchool of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, ChinaCAS Center for Excellence in Brain Science, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaSchool of Biomedical Engineering, Southern Medical University, Guangzhou, ChinaBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaNational Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaSchool of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, ChinaBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaNational Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaCAS Center for Excellence in Brain Science, Institute of Automation, Chinese Academy of Sciences, Beijing, ChinaKey Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, ChinaQueensland Brain Institute, University of Queensland, Brisbane, QLD, AustraliaData processing toolboxes for resting-state functional MRI (rs-fMRI) have provided us with a variety of functions and user friendly graphic user interfaces (GUIs). However, many toolboxes only cover a certain range of functions, and use exclusively designed GUIs. To facilitate data processing and alleviate the burden of manually drawing GUIs, we have developed a versatile and extendable MATLAB-based toolbox, BRANT (BRAinNetome fmri Toolkit), with a wide range of rs-fMRI data processing functions and code-generated GUIs. During the implementation, we have also empowered the toolbox with parallel computing techniques, efficient file handling methods for compressed file format, and one-line scripting. In BRANT, users can find rs-fMRI batch processing functions for preprocessing, brain spontaneous activity analysis, functional connectivity analysis, complex network analysis, statistical analysis, and results visualization, while developers can quickly publish scripts with code-generated GUIs.https://www.frontiersin.org/article/10.3389/fninf.2018.00052/fullBRANTresting-state fMRIcode-generated GUIpreprocessingvisualization |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Kaibin Xu Kaibin Xu Kaibin Xu Kaibin Xu Yong Liu Yong Liu Yong Liu Yong Liu Yafeng Zhan Yafeng Zhan Jiaji Ren Jiaji Ren Jiaji Ren Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang |
spellingShingle |
Kaibin Xu Kaibin Xu Kaibin Xu Kaibin Xu Yong Liu Yong Liu Yong Liu Yong Liu Yafeng Zhan Yafeng Zhan Jiaji Ren Jiaji Ren Jiaji Ren Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang BRANT: A Versatile and Extendable Resting-State fMRI Toolkit Frontiers in Neuroinformatics BRANT resting-state fMRI code-generated GUI preprocessing visualization |
author_facet |
Kaibin Xu Kaibin Xu Kaibin Xu Kaibin Xu Yong Liu Yong Liu Yong Liu Yong Liu Yafeng Zhan Yafeng Zhan Jiaji Ren Jiaji Ren Jiaji Ren Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang Tianzi Jiang |
author_sort |
Kaibin Xu |
title |
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit |
title_short |
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit |
title_full |
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit |
title_fullStr |
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit |
title_full_unstemmed |
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit |
title_sort |
brant: a versatile and extendable resting-state fmri toolkit |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Neuroinformatics |
issn |
1662-5196 |
publishDate |
2018-09-01 |
description |
Data processing toolboxes for resting-state functional MRI (rs-fMRI) have provided us with a variety of functions and user friendly graphic user interfaces (GUIs). However, many toolboxes only cover a certain range of functions, and use exclusively designed GUIs. To facilitate data processing and alleviate the burden of manually drawing GUIs, we have developed a versatile and extendable MATLAB-based toolbox, BRANT (BRAinNetome fmri Toolkit), with a wide range of rs-fMRI data processing functions and code-generated GUIs. During the implementation, we have also empowered the toolbox with parallel computing techniques, efficient file handling methods for compressed file format, and one-line scripting. In BRANT, users can find rs-fMRI batch processing functions for preprocessing, brain spontaneous activity analysis, functional connectivity analysis, complex network analysis, statistical analysis, and results visualization, while developers can quickly publish scripts with code-generated GUIs. |
topic |
BRANT resting-state fMRI code-generated GUI preprocessing visualization |
url |
https://www.frontiersin.org/article/10.3389/fninf.2018.00052/full |
work_keys_str_mv |
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