Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1

Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be use...

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Main Authors: Jasenko Zivanov, Takanori Nakane, Sjors H. W. Scheres
Format: Article
Language:English
Published: International Union of Crystallography 2020-03-01
Series:IUCrJ
Subjects:
Online Access:http://scripts.iucr.org/cgi-bin/paper?S2052252520000081
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spelling doaj-70365abd15de459989db61c9573348cf2020-11-25T00:32:37ZengInternational Union of CrystallographyIUCrJ2052-25252020-03-017225326710.1107/S2052252520000081fq5009Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1Jasenko Zivanov0Takanori Nakane1Sjors H. W. Scheres2Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMethods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION.http://scripts.iucr.org/cgi-bin/paper?S2052252520000081cryo-emrelionaberrationsanisotropic magnification
collection DOAJ
language English
format Article
sources DOAJ
author Jasenko Zivanov
Takanori Nakane
Sjors H. W. Scheres
spellingShingle Jasenko Zivanov
Takanori Nakane
Sjors H. W. Scheres
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
IUCrJ
cryo-em
relion
aberrations
anisotropic magnification
author_facet Jasenko Zivanov
Takanori Nakane
Sjors H. W. Scheres
author_sort Jasenko Zivanov
title Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
title_short Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
title_full Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
title_fullStr Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
title_full_unstemmed Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
title_sort estimation of high-order aberrations and anisotropic magnification from cryo-em data sets in relion-3.1
publisher International Union of Crystallography
series IUCrJ
issn 2052-2525
publishDate 2020-03-01
description Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION.
topic cryo-em
relion
aberrations
anisotropic magnification
url http://scripts.iucr.org/cgi-bin/paper?S2052252520000081
work_keys_str_mv AT jasenkozivanov estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31
AT takanorinakane estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31
AT sjorshwscheres estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31
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