Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be use...
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International Union of Crystallography
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doaj-70365abd15de459989db61c9573348cf2020-11-25T00:32:37ZengInternational Union of CrystallographyIUCrJ2052-25252020-03-017225326710.1107/S2052252520000081fq5009Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1Jasenko Zivanov0Takanori Nakane1Sjors H. W. Scheres2Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMedical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, EnglandMethods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION.http://scripts.iucr.org/cgi-bin/paper?S2052252520000081cryo-emrelionaberrationsanisotropic magnification |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Jasenko Zivanov Takanori Nakane Sjors H. W. Scheres |
spellingShingle |
Jasenko Zivanov Takanori Nakane Sjors H. W. Scheres Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 IUCrJ cryo-em relion aberrations anisotropic magnification |
author_facet |
Jasenko Zivanov Takanori Nakane Sjors H. W. Scheres |
author_sort |
Jasenko Zivanov |
title |
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 |
title_short |
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 |
title_full |
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 |
title_fullStr |
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 |
title_full_unstemmed |
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1 |
title_sort |
estimation of high-order aberrations and anisotropic magnification from cryo-em data sets in relion-3.1 |
publisher |
International Union of Crystallography |
series |
IUCrJ |
issn |
2052-2525 |
publishDate |
2020-03-01 |
description |
Methods are presented that detect three types of aberrations in single-particle cryo-EM data sets: symmetrical and antisymmetrical optical aberrations and magnification anisotropy. Because these methods only depend on the availability of a preliminary 3D reconstruction from the data, they can be used to correct for these aberrations for any given cryo-EM data set, a posteriori. Using five publicly available data sets, it is shown that considering these aberrations improves the resolution of the 3D reconstruction when these effects are present. The methods are implemented in version 3.1 of the open-source software package RELION. |
topic |
cryo-em relion aberrations anisotropic magnification |
url |
http://scripts.iucr.org/cgi-bin/paper?S2052252520000081 |
work_keys_str_mv |
AT jasenkozivanov estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31 AT takanorinakane estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31 AT sjorshwscheres estimationofhighorderaberrationsandanisotropicmagnificationfromcryoemdatasetsinrelion31 |
_version_ |
1725319933051535360 |