Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5

Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5

Paenibacillus ihumii sp. nov. strain AT5 (= CSUR 1981 = DSM 100664) is the type strain of P. ihumii. This bacterium was isolated from a stool sample from a morbidly obese French patient using the culturomics approach. The genome of this Gram-negative, facultative anaerobic, motile and spore-forming...

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Main Authors: A.H. Togo, S. Khelaifia, J.-C. Lagier, A. Caputo, C. Robert, P.-E. Fournier, M. Maraninchi, R. Valero, D. Raoult, M. Million
Format: Article
Language:English
Published: Elsevier 2016-03-01
Series:New Microbes and New Infections
Subjects:
Culturomics
genome
Paenibacillus ihumii sp. nov.
taxonogenomics
Online Access:http://www.sciencedirect.com/science/article/pii/S2052297516000159
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spelling doaj-73e730653ee14c6e8be4c87982881f532020-11-24T22:08:51ZengElsevierNew Microbes and New Infections2052-29752016-03-0110C14215010.1016/j.nmni.2016.01.013Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5A.H. Togo0S. Khelaifia1J.-C. Lagier2A. Caputo3C. Robert4P.-E. Fournier5M. Maraninchi6R. Valero7D. Raoult8M. Million9Aix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, NORT “Nutrition, Obesity and Risk of Thrombosis”, INSERM1062, INRA1260, Marseille, FranceAix Marseille Université, NORT “Nutrition, Obesity and Risk of Thrombosis”, INSERM1062, INRA1260, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FranceAix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, FrancePaenibacillus ihumii sp. nov. strain AT5 (= CSUR 1981 = DSM 100664) is the type strain of P. ihumii. This bacterium was isolated from a stool sample from a morbidly obese French patient using the culturomics approach. The genome of this Gram-negative, facultative anaerobic, motile and spore-forming bacillus is 5 924 686 bp long. Genomic analysis identified 253 (5%) of 3812 genes as ORFans and at least 2599 (50.03%) of 5194 orthologous proteins not shared with the closest phylogenetic species.http://www.sciencedirect.com/science/article/pii/S2052297516000159CulturomicsgenomePaenibacillus ihumii sp. nov.taxonogenomics
collection DOAJ
language English
format Article
sources DOAJ
author A.H. Togo
S. Khelaifia
J.-C. Lagier
A. Caputo
C. Robert
P.-E. Fournier
M. Maraninchi
R. Valero
D. Raoult
M. Million
spellingShingle A.H. Togo
S. Khelaifia
J.-C. Lagier
A. Caputo
C. Robert
P.-E. Fournier
M. Maraninchi
R. Valero
D. Raoult
M. Million
Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
New Microbes and New Infections
Culturomics
genome
Paenibacillus ihumii sp. nov.
taxonogenomics
author_facet A.H. Togo
S. Khelaifia
J.-C. Lagier
A. Caputo
C. Robert
P.-E. Fournier
M. Maraninchi
R. Valero
D. Raoult
M. Million
author_sort A.H. Togo
title Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
title_short Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
title_full Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
title_fullStr Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
title_full_unstemmed Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
title_sort noncontiguous finished genome sequence and description of paenibacillus ihumii sp. nov. strain at5
publisher Elsevier
series New Microbes and New Infections
issn 2052-2975
publishDate 2016-03-01
description Paenibacillus ihumii sp. nov. strain AT5 (= CSUR 1981 = DSM 100664) is the type strain of P. ihumii. This bacterium was isolated from a stool sample from a morbidly obese French patient using the culturomics approach. The genome of this Gram-negative, facultative anaerobic, motile and spore-forming bacillus is 5 924 686 bp long. Genomic analysis identified 253 (5%) of 3812 genes as ORFans and at least 2599 (50.03%) of 5194 orthologous proteins not shared with the closest phylogenetic species.
topic Culturomics
genome
Paenibacillus ihumii sp. nov.
taxonogenomics
url http://www.sciencedirect.com/science/article/pii/S2052297516000159
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