A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI.
Parkinson's disease (PD) is a common and debilitating neurodegenerative disorder that affects patients in all countries and of all nationalities. Magnetic resonance imaging (MRI) is currently one of the most widely used diagnostic imaging techniques utilized for detection of neurologic diseases...
Main Authors: | , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2016-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC4900548?pdf=render |
id |
doaj-76f2f1f634e04dabaf790a75ab305c61 |
---|---|
record_format |
Article |
spelling |
doaj-76f2f1f634e04dabaf790a75ab305c612020-11-24T21:37:03ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01116e015576410.1371/journal.pone.0155764A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI.Monami BanerjeeMichael S OkunDavid E VaillancourtBaba C VemuriParkinson's disease (PD) is a common and debilitating neurodegenerative disorder that affects patients in all countries and of all nationalities. Magnetic resonance imaging (MRI) is currently one of the most widely used diagnostic imaging techniques utilized for detection of neurologic diseases. Changes in structural biomarkers will likely play an important future role in assessing progression of many neurological diseases inclusive of PD. In this paper, we derived structural biomarkers from diffusion MRI (dMRI), a structural modality that allows for non-invasive inference of neuronal fiber connectivity patterns. The structural biomarker we use is the ensemble average propagator (EAP), a probability density function fully characterizing the diffusion locally at a voxel level. To assess changes with respect to a normal anatomy, we construct an unbiased template brain map from the EAP fields of a control population. Use of an EAP captures both orientation and shape information of the diffusion process at each voxel in the dMRI data, and this feature can be a powerful representation to achieve enhanced PD brain mapping. This template brain map construction method is applicable to small animal models as well as to human brains. The differences between the control template brain map and novel patient data can then be assessed via a nonrigid warping algorithm that transforms the novel data into correspondence with the template brain map, thereby capturing the amount of elastic deformation needed to achieve this correspondence. We present the use of a manifold-valued feature called the Cauchy deformation tensor (CDT), which facilitates morphometric analysis and automated classification of a PD versus a control population. Finally, we present preliminary results of automated discrimination between a group of 22 controls and 46 PD patients using CDT. This method may be possibly applied to larger population sizes and other parkinsonian syndromes in the near future.http://europepmc.org/articles/PMC4900548?pdf=render |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Monami Banerjee Michael S Okun David E Vaillancourt Baba C Vemuri |
spellingShingle |
Monami Banerjee Michael S Okun David E Vaillancourt Baba C Vemuri A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. PLoS ONE |
author_facet |
Monami Banerjee Michael S Okun David E Vaillancourt Baba C Vemuri |
author_sort |
Monami Banerjee |
title |
A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. |
title_short |
A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. |
title_full |
A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. |
title_fullStr |
A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. |
title_full_unstemmed |
A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI. |
title_sort |
method for automated classification of parkinson's disease diagnosis using an ensemble average propagator template brain map estimated from diffusion mri. |
publisher |
Public Library of Science (PLoS) |
series |
PLoS ONE |
issn |
1932-6203 |
publishDate |
2016-01-01 |
description |
Parkinson's disease (PD) is a common and debilitating neurodegenerative disorder that affects patients in all countries and of all nationalities. Magnetic resonance imaging (MRI) is currently one of the most widely used diagnostic imaging techniques utilized for detection of neurologic diseases. Changes in structural biomarkers will likely play an important future role in assessing progression of many neurological diseases inclusive of PD. In this paper, we derived structural biomarkers from diffusion MRI (dMRI), a structural modality that allows for non-invasive inference of neuronal fiber connectivity patterns. The structural biomarker we use is the ensemble average propagator (EAP), a probability density function fully characterizing the diffusion locally at a voxel level. To assess changes with respect to a normal anatomy, we construct an unbiased template brain map from the EAP fields of a control population. Use of an EAP captures both orientation and shape information of the diffusion process at each voxel in the dMRI data, and this feature can be a powerful representation to achieve enhanced PD brain mapping. This template brain map construction method is applicable to small animal models as well as to human brains. The differences between the control template brain map and novel patient data can then be assessed via a nonrigid warping algorithm that transforms the novel data into correspondence with the template brain map, thereby capturing the amount of elastic deformation needed to achieve this correspondence. We present the use of a manifold-valued feature called the Cauchy deformation tensor (CDT), which facilitates morphometric analysis and automated classification of a PD versus a control population. Finally, we present preliminary results of automated discrimination between a group of 22 controls and 46 PD patients using CDT. This method may be possibly applied to larger population sizes and other parkinsonian syndromes in the near future. |
url |
http://europepmc.org/articles/PMC4900548?pdf=render |
work_keys_str_mv |
AT monamibanerjee amethodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT michaelsokun amethodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT davidevaillancourt amethodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT babacvemuri amethodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT monamibanerjee methodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT michaelsokun methodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT davidevaillancourt methodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri AT babacvemuri methodforautomatedclassificationofparkinsonsdiseasediagnosisusinganensembleaveragepropagatortemplatebrainmapestimatedfromdiffusionmri |
_version_ |
1725938594571354112 |