The evolving doublecortin (DCX) superfamily

• Main Authors: Sapir Tamar, Kaplan Anna, Levy Talia, Peter Bastian, Coquelle Frédéric M, Reiner Orly, Orr Irit, Barkai Naama, Eichele Gregor, Bergmann Sven
• Format: Article
• Language: English
• Published: BMC 2006-07-01
• Series: BMC Genomics
• Online Access: http://www.biomedcentral.com/1471-2164/7/188

<p>Abstract</p> <p>Background</p> <p>Doublecortin (DCX) domains serve as protein-interaction platforms. Mutations in members of this protein superfamily are linked to several genetic diseases. Mutations in the human <it>DCX </it>gene result in abnormal neuronal migration, epilepsy, and mental retardation; mutations in <it>RP1 </it>are associated with a form of inherited blindness, and <it>DCDC2 </it>has been associated with dyslectic reading disabilities.</p> <p>Results</p> <p>The DCX-repeat gene family is composed of eleven paralogs in human and in mouse. Its evolution was followed across vertebrates, invertebrates, and was traced to unicellular organisms, thus enabling following evolutionary additions and losses of genes or domains. The N-terminal and C-terminal DCX domains have undergone sub-specialization and divergence. Developmental <it>in situ </it>hybridization data for nine genes was generated. In addition, a novel co-expression analysis for most human and mouse DCX superfamily-genes was performed using high-throughput expression data extracted from Unigene. We performed an in-depth study of a complete gene superfamily using several complimentary methods.</p> <p>Conclusion</p> <p>This study reveals the existence and conservation of multiple members of the DCX superfamily in different species. Sequence analysis combined with expression analysis is likely to be a useful tool to predict correlations between human disease and mouse models. The sub-specialization of some members due to restricted expression patterns and sequence divergence may explain the successful addition of genes to this family throughout evolution.</p>