Genome-wide analysis of lectin receptor-like kinases family from potato (Solanum tuberosum L.)

• Main Authors: Weina Zhang, Zhongjian Chen, Yichen Kang, Yanling Fan, Yuhui Liu, Xinyu Yang, Mingfu Shi, Kai Yao, Shuhao Qin
• Format: Article
• Language: English
• Published: PeerJ Inc. 2020-06-01
• Series: PeerJ
• Subjects: Potato; Lectin receptor-like kinase (LecRLKs); Gene duplication; Expressional pattern; RNA-seq-based-transcriptomics; Fungal disease resistance
• Online Access: https://peerj.com/articles/9310.pdf

Lectin receptor-like kinases (LecRLKs) are involved in responses to diverse environmental stresses and pathogenic microbes. A comprehensive acknowledgment of the family members in potato (Solanum tuberosum) genome is largely limited until now. In total, 113 potato LecRLKs (StLecRLKs) were first identified, including 85 G-type, 26 L-type and 2 C-type members. Based on phylogenetic analysis, StLecRLKs were sub-grouped into seven clades, including C-type, L-type, G-I, G-II, G-III G-IV and G-V. Chromosomal distribution and gene duplication analysis revealed the expansion of StLecRLKs occurred majorly through tandem duplication although the whole-genome duplication (WGD)/segmental duplication events were found. Cis-elements in the StLecRLKs promoter region responded mainly to signals of defense and stress, phytohormone, biotic or abiotic stress. Moreover, expressional investigations indicated that the family members of the clades L-type, G-I, G-IV and G-V were responsive to both bacterial and fungal infection. Based on qRT-PCR analysis, the expressions of PGSC0003DMP400055136 and PGSC0003DMP400067047 were strongly induced in all treatments by both Fusarium sulphureum (Fs) and Phytophthora infestans (Pi) inoculation. The present study provides valuable information for LecRLKs gene family in potato genome, and establishes a foundation for further research into the functional analysis.