Defining the function of SUMO system in pod development and abiotic stresses in Peanut

Abstract Background Posttranslational modification of proteins by small ubiquitin like modifier (SUMO) proteins play an important role during the developmental process and in response to abiotic stresses in plants. However, little is known about SUMOylation in peanut (Arachis hypogaea L.), one of th...

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Main Authors: Yiyang Liu, Jiao Zhu, Sheng Sun, Feng Cui, Yan Han, Zhenying Peng, Xuejie Zhang, Shubo Wan, Guowei Li
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Plant Biology
Subjects:
Online Access:https://doi.org/10.1186/s12870-019-2136-9
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spelling doaj-7c5fdac39e8a4a13b77c20f968ea87802021-01-03T12:07:43ZengBMCBMC Plant Biology1471-22292019-12-0119111510.1186/s12870-019-2136-9Defining the function of SUMO system in pod development and abiotic stresses in PeanutYiyang Liu0Jiao Zhu1Sheng Sun2Feng Cui3Yan Han4Zhenying Peng5Xuejie Zhang6Shubo Wan7Guowei Li8Biotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyShandong Key Laboratory of Greenhouse Vegetable Biology, Institute of Vegetables and Flowers, Shandong Academy of Agricultural SciencesCollege of Teacher Education, Heze UniversityBiotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyBiotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyBiotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyCollege of Life Science, Shandong Normal UniversityBiotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyBiotechnology Research Center, Shandong Academy of Agricultural Sciences; Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and PhysiologyAbstract Background Posttranslational modification of proteins by small ubiquitin like modifier (SUMO) proteins play an important role during the developmental process and in response to abiotic stresses in plants. However, little is known about SUMOylation in peanut (Arachis hypogaea L.), one of the world’s major food legume crops. In this study, we characterized the SUMOylation system from the diploid progenitor genomes of peanut, Arachis duranensis (AA) and Arachis ipaensis (BB). Results Genome-wide analysis revealed the presence of 40 SUMO system genes in A. duranensis and A. ipaensis. Our results showed that peanut also encodes a novel class II isotype of the SCE1, which was previously reported to be uniquely present in cereals. RNA-seq data showed that the core components of the SUMOylation cascade SUMO1/2 and SCE1 genes exhibited pod-specific expression patterns, implying coordinated regulation during pod development. Furthermore, both transcripts and conjugate profiles revealed that SUMOylation has significant roles during the pod development. Moreover, dynamic changes in the SUMO conjugates were observed in response to abiotic stresses. Conclusions The identification and organization of peanut SUMO system revealed SUMOylation has important roles during stress defense and pod development. The present study will serve as a resource for providing new strategies to enhance agronomic yield and reveal the mechanism of peanut pod development.https://doi.org/10.1186/s12870-019-2136-9PeanutSUMO pathwaySUMOylationPod developmentAbiotic stresses
collection DOAJ
language English
format Article
sources DOAJ
author Yiyang Liu
Jiao Zhu
Sheng Sun
Feng Cui
Yan Han
Zhenying Peng
Xuejie Zhang
Shubo Wan
Guowei Li
spellingShingle Yiyang Liu
Jiao Zhu
Sheng Sun
Feng Cui
Yan Han
Zhenying Peng
Xuejie Zhang
Shubo Wan
Guowei Li
Defining the function of SUMO system in pod development and abiotic stresses in Peanut
BMC Plant Biology
Peanut
SUMO pathway
SUMOylation
Pod development
Abiotic stresses
author_facet Yiyang Liu
Jiao Zhu
Sheng Sun
Feng Cui
Yan Han
Zhenying Peng
Xuejie Zhang
Shubo Wan
Guowei Li
author_sort Yiyang Liu
title Defining the function of SUMO system in pod development and abiotic stresses in Peanut
title_short Defining the function of SUMO system in pod development and abiotic stresses in Peanut
title_full Defining the function of SUMO system in pod development and abiotic stresses in Peanut
title_fullStr Defining the function of SUMO system in pod development and abiotic stresses in Peanut
title_full_unstemmed Defining the function of SUMO system in pod development and abiotic stresses in Peanut
title_sort defining the function of sumo system in pod development and abiotic stresses in peanut
publisher BMC
series BMC Plant Biology
issn 1471-2229
publishDate 2019-12-01
description Abstract Background Posttranslational modification of proteins by small ubiquitin like modifier (SUMO) proteins play an important role during the developmental process and in response to abiotic stresses in plants. However, little is known about SUMOylation in peanut (Arachis hypogaea L.), one of the world’s major food legume crops. In this study, we characterized the SUMOylation system from the diploid progenitor genomes of peanut, Arachis duranensis (AA) and Arachis ipaensis (BB). Results Genome-wide analysis revealed the presence of 40 SUMO system genes in A. duranensis and A. ipaensis. Our results showed that peanut also encodes a novel class II isotype of the SCE1, which was previously reported to be uniquely present in cereals. RNA-seq data showed that the core components of the SUMOylation cascade SUMO1/2 and SCE1 genes exhibited pod-specific expression patterns, implying coordinated regulation during pod development. Furthermore, both transcripts and conjugate profiles revealed that SUMOylation has significant roles during the pod development. Moreover, dynamic changes in the SUMO conjugates were observed in response to abiotic stresses. Conclusions The identification and organization of peanut SUMO system revealed SUMOylation has important roles during stress defense and pod development. The present study will serve as a resource for providing new strategies to enhance agronomic yield and reveal the mechanism of peanut pod development.
topic Peanut
SUMO pathway
SUMOylation
Pod development
Abiotic stresses
url https://doi.org/10.1186/s12870-019-2136-9
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