Whole-Genome Sequencing-Based Characteristics in Extended-Spectrum Beta-Lactamase-Producing <i>Escherichia coli</i> Isolated from Retail Meats in Korea

The spread of extended-spectrum beta-lactamase-producing <i>Escherichia coli</i> (ESBL-EC) has posed a critical health risk to both humans and animals, because resistance to beta-lactam antibiotics makes treatment for commonly infectious diseases more complicated. In this study, we repor...

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Bibliographic Details
Main Authors: Seokhwan Kim, Hansol Kim, Yonghoon Kim, Migyeong Kim, Hyosun Kwak, Sangryeol Ryu
Format: Article
Language:English
Published: MDPI AG 2020-04-01
Series:Microorganisms
Subjects:
Online Access:https://www.mdpi.com/2076-2607/8/4/508
Description
Summary:The spread of extended-spectrum beta-lactamase-producing <i>Escherichia coli</i> (ESBL-EC) has posed a critical health risk to both humans and animals, because resistance to beta-lactam antibiotics makes treatment for commonly infectious diseases more complicated. In this study, we report the prevalence and genetic characteristics of ESBL-ECs isolated from retail meat samples in Korea. A total of 1205 <i>E. coli</i> strains were isolated from 3234 raw meat samples, purchased from nationwide retail stores between 2015 and 2018. Antimicrobial susceptibility testing was performed for all isolates by a broth microdilution method, and the ESBL phenotype was determined according to the Clinical and Laboratory Standards Institute (CLSI) confirmatory method. All ESBL-EC isolates (<i>n</i> = 29) were subjected to whole-genome sequencing (WGS). The antimicrobial resistance genes, plasmid incompatibility types, <i>E. coli</i> phylogroups, and phylogenetic relations were investigated based on the WGS data. The prevalence of ESBL-ECs in chicken was significantly higher than that in other meat samples. The results in this study demonstrate that clonally diverse ESBL-ECs with a multidrug resistance phenotype were distributed nationwide, although their prevalence from retail meat was 0.9%. The dissemination of ESBL-ECs from retail meat poses a potential risk to consumers and food-handlers, suggesting that the continuous surveillance of ESBL-ECs in retail meat should be conducted at the national level.
ISSN:2076-2607