Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling
Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was...
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doaj-818c2fca5da7403ca21771e78fa6a1762021-05-26T14:46:09ZengeLife Sciences Publications LtdeLife2050-084X2021-05-011010.7554/eLife.66274Biological controls for standardization and interpretation of adaptive immune receptor repertoire profilingJohannes Trück0https://orcid.org/0000-0002-0418-7381Anne Eugster1https://orcid.org/0000-0001-8009-5959Pierre Barennes2Christopher M Tipton3Eline T Luning Prak4https://orcid.org/0000-0002-9478-9211Davide Bagnara5Cinque Soto6https://orcid.org/0000-0002-3997-6217Jacob S Sherkow7https://orcid.org/0000-0002-9724-9261Aimee S Payne8Marie-Paule Lefranc9https://orcid.org/0000-0003-0116-9353Andrew Farmer10The AIRR CommunityMagnolia Bostick11Encarnita Mariotti-Ferrandiz12https://orcid.org/0000-0002-8770-0186University Children’s Hospital and the Children’s Research Center, University of Zurich, Zurich, SwitzerlandCRTD Center for Regenerative Therapies Dresden, Faculty of Medicine, Technische Universität Dresden, Dresden, GermanySorbonne Université U959, Immunology-Immunopathology-Immunotherapy (i3), Paris, France; AP-HP Hôpital Pitié-Salpêtrière, Biotherapy (CIC-BTi), Paris, FranceLowance Center for Human Immunology, Emory University School of Medicine, Atlanta, United StatesPerelman School of Medicine, University of Pennsylvania, Philadelphia, United StatesUniversity of Genoa, Department of Experimental Medicine, Genoa, ItalyThe Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, United States; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, United StatesCollege of Law, University of Illinois, Champaign, United States; Center for Advanced Studies in Biomedical Innovation Law, University of Copenhagen Faculty of Law, Copenhagen, Denmark; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, Illinois, United StatesPerelman School of Medicine, University of Pennsylvania, Philadelphia, United StatesIMGT, The International ImMunoGeneTics Information System (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), CNRS, University of Montpellier, Montpellier, France; Laboratoire d'ImmunoGénétique Moléculaire (LIGM) CNRS, University of Montpellier, Montpellier, France; Institut de Génétique Humaine (IGH), CNRS, University of Montpellier, Montpellier, FranceTakara Bio USA, Inc., Mountain View, United StatesTakara Bio USA, Inc., Mountain View, United StatesSorbonne Université U959, Immunology-Immunopathology-Immunotherapy (i3), Paris, FranceUse of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community’s Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work.https://elifesciences.org/articles/66274T-cell Receptor (TCR)B-cell Receptor (BCR)next generation sequencing (NGS)immunoglobulinantibodyIG |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Johannes Trück Anne Eugster Pierre Barennes Christopher M Tipton Eline T Luning Prak Davide Bagnara Cinque Soto Jacob S Sherkow Aimee S Payne Marie-Paule Lefranc Andrew Farmer The AIRR Community Magnolia Bostick Encarnita Mariotti-Ferrandiz |
spellingShingle |
Johannes Trück Anne Eugster Pierre Barennes Christopher M Tipton Eline T Luning Prak Davide Bagnara Cinque Soto Jacob S Sherkow Aimee S Payne Marie-Paule Lefranc Andrew Farmer The AIRR Community Magnolia Bostick Encarnita Mariotti-Ferrandiz Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling eLife T-cell Receptor (TCR) B-cell Receptor (BCR) next generation sequencing (NGS) immunoglobulin antibody IG |
author_facet |
Johannes Trück Anne Eugster Pierre Barennes Christopher M Tipton Eline T Luning Prak Davide Bagnara Cinque Soto Jacob S Sherkow Aimee S Payne Marie-Paule Lefranc Andrew Farmer The AIRR Community Magnolia Bostick Encarnita Mariotti-Ferrandiz |
author_sort |
Johannes Trück |
title |
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
title_short |
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
title_full |
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
title_fullStr |
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
title_full_unstemmed |
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
title_sort |
biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling |
publisher |
eLife Sciences Publications Ltd |
series |
eLife |
issn |
2050-084X |
publishDate |
2021-05-01 |
description |
Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community’s Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work. |
topic |
T-cell Receptor (TCR) B-cell Receptor (BCR) next generation sequencing (NGS) immunoglobulin antibody IG |
url |
https://elifesciences.org/articles/66274 |
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