Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>

This study was conducted to investigate doubled haploid (DH) lines produced between high GSL (HGSL) <i>B</i><i>rassica rapa</i> ssp. <i>trilocularis</i> (yellow sarson) and low GSL (LGSL) <i>B. rapa</i> ssp. <i>chinensis</i> (pak choi) pare...

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Main Authors: Prabhakaran Soundararajan, Sin-Gi Park, So Youn Won, Mi-Sun Moon, Hyun Woo Park, Kang-Mo Ku, Jung Sun Kim
Format: Article
Language:English
Published: MDPI AG 2021-07-01
Series:International Journal of Molecular Sciences
Subjects:
Online Access:https://www.mdpi.com/1422-0067/22/14/7301
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spelling doaj-82daa928a9264ed7bb371ecec1c847552021-07-23T13:45:20ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672021-07-01227301730110.3390/ijms22147301Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>Prabhakaran Soundararajan0Sin-Gi Park1So Youn Won2Mi-Sun Moon3Hyun Woo Park4Kang-Mo Ku5Jung Sun Kim6Genomics Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wansan-gu, Jeonju 54874, KoreaBioinformatics Team of Theragen Etex Institute, Suwon 16229, KoreaGenomics Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wansan-gu, Jeonju 54874, KoreaGenomics Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wansan-gu, Jeonju 54874, KoreaGenomics Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wansan-gu, Jeonju 54874, KoreaBK21 Interdisciplinary Program in IT-Bio Convergence System, Chonnam National University, Gwangju 61186, KoreaGenomics Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wansan-gu, Jeonju 54874, KoreaThis study was conducted to investigate doubled haploid (DH) lines produced between high GSL (HGSL) <i>B</i><i>rassica rapa</i> ssp. <i>trilocularis</i> (yellow sarson) and low GSL (LGSL) <i>B. rapa</i> ssp. <i>chinensis</i> (pak choi) parents. In total, 161 DH lines were generated. GSL content of HGSL DH lines ranged from 44.12 to 57.04 μmol·g<sup>−1</sup>·dry weight (dw), which is within the level of high GSL <i>B. rapa</i> ssp. <i>trilocularis</i> (47.46 to 59.56 μmol g<sup>−1</sup> dw). We resequenced five of the HGSL DH lines and three of the LGSL DH lines. Recombination blocks were formed between the parental and DH lines with 108,328 single-nucleotide polymorphisms in all chromosomes. In the measured GSL, gluconapin occurred as the major substrate in HGSL DH lines. Among the HGSL DH lines, BrYSP_DH005 had glucoraphanin levels approximately 12-fold higher than those of the HGSL mother plant. The hydrolysis capacity of GSL was analyzed in HGSL DH lines with a Korean pak choi cultivar as a control. Bioactive compounds, such as 3-butenyl isothiocyanate, 4-pentenyl isothiocyanate, 2-phenethyl isothiocyanate, and sulforaphane, were present in the HGSL DH lines at 3-fold to 6.3-fold higher levels compared to the commercial cultivar. The selected HGSL DH lines, resequencing data, and SNP identification were utilized for genome-assisted selection to develop elite GSL-enriched cultivars and the industrial production of potential anti-cancerous metabolites such as gluconapin and glucoraphanin.https://www.mdpi.com/1422-0067/22/14/7301biologically active compoundsglucosinolate synthesisrecombinant blocksdoubled haploid linesisothiocyanatescancer prevention
collection DOAJ
language English
format Article
sources DOAJ
author Prabhakaran Soundararajan
Sin-Gi Park
So Youn Won
Mi-Sun Moon
Hyun Woo Park
Kang-Mo Ku
Jung Sun Kim
spellingShingle Prabhakaran Soundararajan
Sin-Gi Park
So Youn Won
Mi-Sun Moon
Hyun Woo Park
Kang-Mo Ku
Jung Sun Kim
Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
International Journal of Molecular Sciences
biologically active compounds
glucosinolate synthesis
recombinant blocks
doubled haploid lines
isothiocyanates
cancer prevention
author_facet Prabhakaran Soundararajan
Sin-Gi Park
So Youn Won
Mi-Sun Moon
Hyun Woo Park
Kang-Mo Ku
Jung Sun Kim
author_sort Prabhakaran Soundararajan
title Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
title_short Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
title_full Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
title_fullStr Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
title_full_unstemmed Influence of Genotype on High Glucosinolate Synthesis Lines of <i>Brassica rapa</i>
title_sort influence of genotype on high glucosinolate synthesis lines of <i>brassica rapa</i>
publisher MDPI AG
series International Journal of Molecular Sciences
issn 1661-6596
1422-0067
publishDate 2021-07-01
description This study was conducted to investigate doubled haploid (DH) lines produced between high GSL (HGSL) <i>B</i><i>rassica rapa</i> ssp. <i>trilocularis</i> (yellow sarson) and low GSL (LGSL) <i>B. rapa</i> ssp. <i>chinensis</i> (pak choi) parents. In total, 161 DH lines were generated. GSL content of HGSL DH lines ranged from 44.12 to 57.04 μmol·g<sup>−1</sup>·dry weight (dw), which is within the level of high GSL <i>B. rapa</i> ssp. <i>trilocularis</i> (47.46 to 59.56 μmol g<sup>−1</sup> dw). We resequenced five of the HGSL DH lines and three of the LGSL DH lines. Recombination blocks were formed between the parental and DH lines with 108,328 single-nucleotide polymorphisms in all chromosomes. In the measured GSL, gluconapin occurred as the major substrate in HGSL DH lines. Among the HGSL DH lines, BrYSP_DH005 had glucoraphanin levels approximately 12-fold higher than those of the HGSL mother plant. The hydrolysis capacity of GSL was analyzed in HGSL DH lines with a Korean pak choi cultivar as a control. Bioactive compounds, such as 3-butenyl isothiocyanate, 4-pentenyl isothiocyanate, 2-phenethyl isothiocyanate, and sulforaphane, were present in the HGSL DH lines at 3-fold to 6.3-fold higher levels compared to the commercial cultivar. The selected HGSL DH lines, resequencing data, and SNP identification were utilized for genome-assisted selection to develop elite GSL-enriched cultivars and the industrial production of potential anti-cancerous metabolites such as gluconapin and glucoraphanin.
topic biologically active compounds
glucosinolate synthesis
recombinant blocks
doubled haploid lines
isothiocyanates
cancer prevention
url https://www.mdpi.com/1422-0067/22/14/7301
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