EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments

<p>Abstract</p> <p>Background</p> <p>Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold recognition. We propose a new automated method, EvDTree, based on...

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Bibliographic Details
Main Authors: Gracy Jérôme, Chiche Laurent, Gelly Jean-Christophe
Format: Article
Language:English
Published: BMC 2005-01-01
Series:BMC Bioinformatics
Online Access:http://www.biomedcentral.com/1471-2105/6/4

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