Quantum computational investigations and molecular docking studies on amentoflavone

Chagas disease is a neglected tropical disease caused by the protozoan parasite Trypanosoma cruzi, with approximately 6–7 million people infected worldwide, becoming a public health problem in tropical countries, thus generating an increasing demand for the development of more effective drugs, due t...

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Main Authors: Márcia M. Marinho, Francisco Wagner Q. Almeida-Neto, Emanuelle M. Marinho, Leonardo P. da Silva, Ramon R.P.P.B. Menezes, Ricardo P. dos Santos, Emmanuel S. Marinho, Pedro de Lima-Neto, Alice M.C. Martins
Format: Article
Language:English
Published: Elsevier 2021-01-01
Series:Heliyon
Subjects:
DFT
NLO
Online Access:http://www.sciencedirect.com/science/article/pii/S2405844021001845
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spelling doaj-8448fec166da4c5b9d79962ba0f1ecc12021-02-05T16:14:21ZengElsevierHeliyon2405-84402021-01-0171e06079Quantum computational investigations and molecular docking studies on amentoflavoneMárcia M. Marinho0Francisco Wagner Q. Almeida-Neto1Emanuelle M. Marinho2Leonardo P. da Silva3Ramon R.P.P.B. Menezes4Ricardo P. dos Santos5Emmanuel S. Marinho6Pedro de Lima-Neto7Alice M.C. Martins8Departamento de Análises Clínicas e Toxicológicas, Centro de Ciências da Saúde, Universidade Federal do Ceará, Campus Porangabussu, 60430-370, Fortaleza, Ceará, Brazil; Corresponding author.Departamento de Química Analítica e Físico-Química, Centro de Ciências, Universidade Federal do Ceará, Campus do Pici, Bloco 940, 60440-900, Fortaleza, Ceará, BrazilDepartamento de Química Analítica e Físico-Química, Centro de Ciências, Universidade Federal do Ceará, Campus do Pici, Bloco 940, 60440-900, Fortaleza, Ceará, BrazilDepartamento de Química Analítica e Físico-Química, Centro de Ciências, Universidade Federal do Ceará, Campus do Pici, Bloco 940, 60440-900, Fortaleza, Ceará, BrazilDepartamento de Análises Clínicas e Toxicológicas, Centro de Ciências da Saúde, Universidade Federal do Ceará, Campus Porangabussu, 60430-370, Fortaleza, Ceará, BrazilEngenharia de Computação / Biotecnologia, Universidade Federal do Ceará, Campus de Sobral, 62010-560, Sobral Ceará, BrazilFaculdade de Filosofia Dom Aureliano Matos, Universidade Estadual do Ceará, 62930-000, Limoeiro do Norte, Ceará, BrazilDepartamento de Química Analítica e Físico-Química, Centro de Ciências, Universidade Federal do Ceará, Campus do Pici, Bloco 940, 60440-900, Fortaleza, Ceará, BrazilDepartamento de Análises Clínicas e Toxicológicas, Centro de Ciências da Saúde, Universidade Federal do Ceará, Campus Porangabussu, 60430-370, Fortaleza, Ceará, BrazilChagas disease is a neglected tropical disease caused by the protozoan parasite Trypanosoma cruzi, with approximately 6–7 million people infected worldwide, becoming a public health problem in tropical countries, thus generating an increasing demand for the development of more effective drugs, due to the low efficiency of the existing drugs. Aiming at the development of a new antichagasic pharmacological tool, the density functional theory was used to calculate the reactivity descriptors of amentoflavone, a biflavonoid with proven anti-trypanosomal activity in vitro, as well as to perform a study of interactions with the enzyme cruzain, an enzyme key in the evolutionary process of T-cruzi. Structural properties (in solvents with different values of dielectric constant), the infrared spectrum, the frontier orbitals, Fukui analysis, thermodynamic properties were the parameters calculated from DFT method with the monomeric structure of the apigenin used for comparison. Furthermore, molecular docking studies were performed to assess the potential use of this biflavonoid as a pharmacological antichagasic tool. The frontier orbitals (HOMO-LUMO) study to find the band gap of compound has been extended to calculate electron affinity, ionization energy, electronegativity electrophilicity index, chemical potential, global chemical hardness and global chemical softness to study the chemical behaviour of compound. The optimized structure was subjected to molecular Docking to characterize the interaction between amentoflavone and cruzain enzyme, a classic pharmacological target for substances with anti-gas activity, where significant interactions were observed with amino acid residues from each one's catalytic sites enzyme. These results suggest that amentoflavone has the potential to interfere with the enzymatic activity of cruzain, thus being an indicative of being a promising antichagasic agent.http://www.sciencedirect.com/science/article/pii/S2405844021001845Antichagasic agentBiflavonoidDFTFukui analysisNLO
collection DOAJ
language English
format Article
sources DOAJ
author Márcia M. Marinho
Francisco Wagner Q. Almeida-Neto
Emanuelle M. Marinho
Leonardo P. da Silva
Ramon R.P.P.B. Menezes
Ricardo P. dos Santos
Emmanuel S. Marinho
Pedro de Lima-Neto
Alice M.C. Martins
spellingShingle Márcia M. Marinho
Francisco Wagner Q. Almeida-Neto
Emanuelle M. Marinho
Leonardo P. da Silva
Ramon R.P.P.B. Menezes
Ricardo P. dos Santos
Emmanuel S. Marinho
Pedro de Lima-Neto
Alice M.C. Martins
Quantum computational investigations and molecular docking studies on amentoflavone
Heliyon
Antichagasic agent
Biflavonoid
DFT
Fukui analysis
NLO
author_facet Márcia M. Marinho
Francisco Wagner Q. Almeida-Neto
Emanuelle M. Marinho
Leonardo P. da Silva
Ramon R.P.P.B. Menezes
Ricardo P. dos Santos
Emmanuel S. Marinho
Pedro de Lima-Neto
Alice M.C. Martins
author_sort Márcia M. Marinho
title Quantum computational investigations and molecular docking studies on amentoflavone
title_short Quantum computational investigations and molecular docking studies on amentoflavone
title_full Quantum computational investigations and molecular docking studies on amentoflavone
title_fullStr Quantum computational investigations and molecular docking studies on amentoflavone
title_full_unstemmed Quantum computational investigations and molecular docking studies on amentoflavone
title_sort quantum computational investigations and molecular docking studies on amentoflavone
publisher Elsevier
series Heliyon
issn 2405-8440
publishDate 2021-01-01
description Chagas disease is a neglected tropical disease caused by the protozoan parasite Trypanosoma cruzi, with approximately 6–7 million people infected worldwide, becoming a public health problem in tropical countries, thus generating an increasing demand for the development of more effective drugs, due to the low efficiency of the existing drugs. Aiming at the development of a new antichagasic pharmacological tool, the density functional theory was used to calculate the reactivity descriptors of amentoflavone, a biflavonoid with proven anti-trypanosomal activity in vitro, as well as to perform a study of interactions with the enzyme cruzain, an enzyme key in the evolutionary process of T-cruzi. Structural properties (in solvents with different values of dielectric constant), the infrared spectrum, the frontier orbitals, Fukui analysis, thermodynamic properties were the parameters calculated from DFT method with the monomeric structure of the apigenin used for comparison. Furthermore, molecular docking studies were performed to assess the potential use of this biflavonoid as a pharmacological antichagasic tool. The frontier orbitals (HOMO-LUMO) study to find the band gap of compound has been extended to calculate electron affinity, ionization energy, electronegativity electrophilicity index, chemical potential, global chemical hardness and global chemical softness to study the chemical behaviour of compound. The optimized structure was subjected to molecular Docking to characterize the interaction between amentoflavone and cruzain enzyme, a classic pharmacological target for substances with anti-gas activity, where significant interactions were observed with amino acid residues from each one's catalytic sites enzyme. These results suggest that amentoflavone has the potential to interfere with the enzymatic activity of cruzain, thus being an indicative of being a promising antichagasic agent.
topic Antichagasic agent
Biflavonoid
DFT
Fukui analysis
NLO
url http://www.sciencedirect.com/science/article/pii/S2405844021001845
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